Run ID: ERR4821849
Sample name:
Date: 01-04-2023 17:29:20
Number of reads: 1837385
Percentage reads mapped: 96.05
Strain: lineage4.5
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
ccsA | 620566 | p.Asp226Asn | missense_variant | 1.0 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.26 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472498 | n.653C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475892 | n.2235A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475897 | n.2240T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475900 | n.2243A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475938 | n.2281C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476501 | n.2844C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476513 | n.2856G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476520 | n.2863G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476529 | n.2872A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476539 | n.2882A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476544 | n.2887T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476547 | n.2890C>A | non_coding_transcript_exon_variant | 0.15 |
rpsA | 1833424 | c.-118C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714308 | p.Pro342Leu | missense_variant | 1.0 |
thyA | 3074592 | c.-121G>A | upstream_gene_variant | 1.0 |
ald | 3087510 | p.Arg231Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878534 | c.-27C>T | upstream_gene_variant | 0.18 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4248548 | p.Ala679Thr | missense_variant | 0.99 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |