TB-Profiler result

Run: ERR4821904
Summary

Run ID: ERR4821904

Sample name:

Date: 01-04-2023 17:31:11

Number of reads: 1017116

Percentage reads mapped: 99.94

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7344 p.Ile15Val missense_variant 0.11
mshA 576108 p.Ala254Gly missense_variant 0.22
rpoB 760751 c.945G>T synonymous_variant 0.1
rpoB 760892 c.1086C>T synonymous_variant 0.15
rpoB 762609 p.His935Asn missense_variant 0.11
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
pncA 2289815 c.-574C>T upstream_gene_variant 0.12
pepQ 2860203 c.216A>G synonymous_variant 0.11
ribD 2987451 p.Arg205Ser missense_variant 0.11
thyX 3067358 c.588C>T synonymous_variant 0.15
fprA 3475236 c.1230A>G synonymous_variant 0.17
embB 4246584 p.Arg24Pro missense_variant 0.2