TB-Profiler result

Run: ERR4822050
Summary

Run ID: ERR4822050

Sample name:

Date: 01-04-2023 17:36:23

Number of reads: 1139252

Percentage reads mapped: 99.83

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv1258c 1406845 p.Ala166Ser missense_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473709 n.52A>G non_coding_transcript_exon_variant 0.11
tlyA 1918062 c.123G>A synonymous_variant 0.18
folC 2746199 p.Val467Asp missense_variant 0.1
pepQ 2860162 p.Arg86Pro missense_variant 0.18
fbiB 3642774 p.Leu414Val missense_variant 0.11
embA 4243917 c.689delG frameshift_variant 0.11
embA 4244184 p.Ser318Leu missense_variant 0.11