TB-Profiler result

Run: ERR4822149
Summary

Run ID: ERR4822149

Sample name:

Date: 01-04-2023 17:39:55

Number of reads: 2921

Percentage reads mapped: 31.43

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrl 1474707 n.1051_1052delCG non_coding_transcript_exon_variant 1.0
rrl 1474711 n.1055_1056insCAAG non_coding_transcript_exon_variant 1.0
rrl 1474715 n.1060_1061delAA non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 1.0
rrl 1474752 n.1096delA non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rpsA 1834849 c.1308C>G synonymous_variant 1.0
rpsA 1834852 c.1311C>G synonymous_variant 1.0
thyX 3067439 c.507A>G synonymous_variant 1.0
thyX 3067445 c.501C>G synonymous_variant 1.0
thyX 3067457 c.489C>G synonymous_variant 1.0
thyX 3067465 p.Ile161Val missense_variant 1.0
thyX 3067475 c.471A>G synonymous_variant 1.0
thyX 3067490 c.456C>G synonymous_variant 1.0
thyX 3067493 c.453A>G synonymous_variant 1.0