Run ID: ERR4822198
Sample name:
Date: 01-04-2023 17:41:27
Number of reads: 253426
Percentage reads mapped: 89.22
Strain: lineage4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.88 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6431 | p.Ala398Thr | missense_variant | 0.33 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575331 | c.-17C>A | upstream_gene_variant | 0.67 |
mshA | 575856 | p.Ala170Glu | missense_variant | 0.18 |
rpoB | 761233 | p.Arg476Pro | missense_variant | 0.4 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777772 | p.Val237Leu | missense_variant | 0.25 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1407286 | p.Ala19Thr | missense_variant | 0.25 |
embR | 1416734 | c.613delG | frameshift_variant | 0.33 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.22 |
rpsA | 1834836 | p.Met432Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154495 | c.1617C>A | synonymous_variant | 0.29 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv1979c | 2223325 | c.-161G>A | upstream_gene_variant | 0.33 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
eis | 2715435 | c.-104_-103insG | upstream_gene_variant | 0.29 |
ahpC | 2725991 | c.-202C>T | upstream_gene_variant | 0.5 |
Rv2752c | 3067135 | c.-944C>T | upstream_gene_variant | 1.0 |
thyX | 3067510 | c.436C>T | synonymous_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339098 | c.-20G>A | upstream_gene_variant | 0.33 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3640546 | p.Lys2Glu | missense_variant | 0.22 |
fbiB | 3640593 | c.-942C>T | upstream_gene_variant | 0.5 |
fbiB | 3642808 | p.Ala425Val | missense_variant | 0.33 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247198 | p.Thr229Ser | missense_variant | 0.33 |
ethA | 4327131 | p.Arg115Ser | missense_variant | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407720 | c.483C>G | synonymous_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 0.83 |