TB-Profiler result

Run: ERR4822272
Summary

Run ID: ERR4822272

Sample name:

Date: 01-04-2023 17:44:03

Number of reads: 2594419

Percentage reads mapped: 99.91

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.11
rrl 1474686 n.1029A>G non_coding_transcript_exon_variant 0.13
rrl 1475109 n.1452C>A non_coding_transcript_exon_variant 0.25
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.13
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.14
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.14
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.15
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.15
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.14
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.12
rrl 1476424 n.2767G>T non_coding_transcript_exon_variant 0.1