Run ID: ERR4827716
Sample name:
Date: 01-04-2023 18:16:51
Number of reads: 5211627
Percentage reads mapped: 99.55
Strain: lineage4.6
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575154 | c.-194G>T | upstream_gene_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.31 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
inhA | 1674096 | c.-106G>A | upstream_gene_variant | 0.99 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.16 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568648 | c.31_32insT | frameshift_variant | 1.0 |
Rv3236c | 3612360 | p.Gly253Arg | missense_variant | 1.0 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.32 |
rpoA | 3878620 | c.-113C>A | upstream_gene_variant | 0.92 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244832 | p.Val534Leu | missense_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.42 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |