Run ID: ERR4829484
Sample name:
Date: 01-04-2023 19:30:33
Number of reads: 2495570
Percentage reads mapped: 99.66
Strain: lineage4.7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491639 | p.Val286Ala | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.28 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.17 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.33 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.29 |
whiB7 | 3568610 | p.Asp24His | missense_variant | 1.0 |
alr | 3840618 | p.Asp268Gly | missense_variant | 1.0 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243929 | p.Leu233Met | missense_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.22 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.29 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |