Run ID: ERR495168
Sample name:
Date: 01-04-2023 21:40:43
Number of reads: 159899
Percentage reads mapped: 98.83
Strain:
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.19 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6469 | c.-833T>C | upstream_gene_variant | 0.22 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7704 | p.Thr135Ala | missense_variant | 0.4 |
gyrA | 8390 | c.1089C>A | synonymous_variant | 0.67 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491164 | p.Arg128Trp | missense_variant | 0.5 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 760663 | p.Ala286Glu | missense_variant | 0.29 |
rpoC | 762896 | c.-474G>T | upstream_gene_variant | 0.25 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475517 | n.1860C>A | non_coding_transcript_exon_variant | 0.67 |
rpsA | 1833674 | p.Lys45Glu | missense_variant | 1.0 |
Rv1979c | 2222031 | c.1134G>T | synonymous_variant | 0.18 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.5 |
folC | 2747418 | p.Gln61Lys | missense_variant | 0.4 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiB | 3642486 | p.Arg318Trp | missense_variant | 0.25 |
clpC1 | 4040366 | c.339C>A | synonymous_variant | 0.4 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4244606 | c.1374G>A | synonymous_variant | 0.29 |
gid | 4407973 | p.Val77Gly | missense_variant | 1.0 |