TB-Profiler result

Run: ERR4972488
Summary

Run ID: ERR4972488

Sample name:

Date: 01-04-2023 21:42:58

Number of reads: 25993

Percentage reads mapped: 78.89

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6509 p.Arg424* stop_gained 0.5
gyrA 8989 p.Thr563Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
thyA 3073868 p.Thr202Ala missense_variant 1.0
thyA 3073881 c.591C>A synonymous_variant 0.67
whiB6 4338718 c.-197C>A upstream_gene_variant 0.67
gid 4408156 p.Leu16Arg missense_variant 1.0