Run ID: ERR501647
Sample name:
Date: 2024-04-15T04:42:39.879862
Number of reads: 220207
Percentage reads mapped: 94.12
Median coverage: 4.0
Strain: lineage2.2.1.1
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage2 | East-Asian | RD105 | 0.26 |
lineage2.2.1 | East-Asian (Beijing) | RD105;RD207;RD181 | 0.38 |
lineage2.2 | East-Asian (Beijing) | RD105;RD207 | 0.3 |
lineage2.2.1.1 | East-Asian (Beijing) | RD105;RD207;RD181;RD150 | 0.31 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
Rv1979c | 2223014 | p.Tyr51Asn | missense_variant | 1.0 | clofazimine | Uncertain significance |
bedaquiline | Uncertain significance | |||||
embB | 4248115 | c.1602C>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
gid | 4407588 | c.615A>G | synonymous_variant | 0.82 | streptomycin | Not assoc w R |