Run ID: ERR552309
Sample name:
Date: 02-08-2023 08:46:56
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490751 | c.-32T>G | upstream_gene_variant | 0.4 |
fgd1 | 491014 | p.Thr78Pro | missense_variant | 0.22 |
fgd1 | 491654 | p.Asp291Gly | missense_variant | 0.2 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.5 |
rpoB | 760564 | p.Arg253Gln | missense_variant | 0.15 |
rpoB | 761587 | p.Asp594Gly | missense_variant | 0.17 |
rpoC | 764768 | p.Gln467* | stop_gained | 0.25 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777822 | p.Leu220Pro | missense_variant | 0.18 |
mmpL5 | 779379 | c.-899C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303342 | p.Phe138Leu | missense_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834561 | c.1020C>T | synonymous_variant | 1.0 |
rpsA | 1834758 | p.Gly406Glu | missense_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2156254 | c.-143G>A | upstream_gene_variant | 0.13 |
Rv1979c | 2221779 | p.Met462Ile | missense_variant | 1.0 |
Rv1979c | 2221878 | c.1287A>G | synonymous_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289895 | c.-654C>A | upstream_gene_variant | 0.2 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
eis | 2715103 | p.Leu77Pro | missense_variant | 0.33 |
pepQ | 2859621 | c.798G>T | synonymous_variant | 0.15 |
Rv2752c | 3065824 | p.Pro123Leu | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612997 | c.120T>G | synonymous_variant | 0.2 |
alr | 3841417 | p.Lys2Glu | missense_variant | 0.15 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embC | 4240305 | p.Leu148Pro | missense_variant | 0.18 |
embC | 4241931 | p.Thr690Ile | missense_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethR | 4327726 | p.Thr60Ala | missense_variant | 0.22 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |