Run ID: ERR552650
Sample name:
Date: 15-08-2022 12:00:57
Number of reads: 684509
Percentage reads mapped: 98.88
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.99 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
ccsA | 620593 | p.Phe235Leu | missense_variant | 0.15 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474099 | n.442G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474767 | n.1110A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475803 | n.2146T>G | non_coding_transcript_exon_variant | 0.16 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
gid | 4408007 | p.Val66Met | missense_variant | 0.2 |