Run ID: ERR5908132
Sample name:
Date: 02-04-2023 00:50:37
Number of reads: 1172059
Percentage reads mapped: 99.53
Strain: lineage4.1.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
lineage4.1.1.2 | Euro-American (X-type) | X1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.19 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302814 | c.-117C>T | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472340 | n.495C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473840 | n.183A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473846 | n.189G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474004 | n.347C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475043 | n.1386T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475327 | n.1670G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475625 | n.1969delT | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476238 | n.2581T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476343 | n.2686A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476494 | n.2837G>A | non_coding_transcript_exon_variant | 0.18 |
rpsA | 1833892 | p.Glu117Asp | missense_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449787 | c.1284C>T | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878172 | c.336G>T | synonymous_variant | 0.12 |
rpoA | 3878630 | c.-123G>C | upstream_gene_variant | 0.13 |
embC | 4241572 | c.1710C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243833 | p.Ala201Thr | missense_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.33 |
embB | 4246930 | p.Gln139His | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 0.98 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |