Run ID: ERR5979730
Sample name:
Date: 02-04-2023 01:20:49
Number of reads: 3101733
Percentage reads mapped: 99.93
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576108 | p.Ala254Gly | missense_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.2 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.33 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.21 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.23 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.21 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.17 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.5 |
embB | 4248319 | c.1806A>T | synonymous_variant | 0.25 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.23 |