Run ID: ERR5979777
Sample name:
Date: 02-04-2023 01:22:36
Number of reads: 4612623
Percentage reads mapped: 99.62
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576108 | p.Ala254Gly | missense_variant | 0.21 |
mmpR5 | 779120 | p.Leu44Pro | missense_variant | 0.11 |
mmpR5 | 779137 | p.Arg50Trp | missense_variant | 0.18 |
mmpR5 | 779285 | p.Ala99Val | missense_variant | 0.18 |
mmpR5 | 779350 | p.Gly121Glu | missense_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.54 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.24 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.17 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.18 |