TB-Profiler result

Run: ERR5979791

Summary

Run ID: ERR5979791

Sample name:

Date: 02-04-2023 01:23:25

Number of reads: 5702606

Percentage reads mapped: 98.49

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576108 p.Ala254Gly missense_variant 0.23
rpoC 764367 p.Gly333Ala missense_variant 0.19
mmpL5 777119 p.His454Gln missense_variant 0.12
mmpL5 777122 c.1359C>T synonymous_variant 0.12
mmpL5 777128 c.1353A>G synonymous_variant 0.12
mmpL5 777883 p.Gly200Arg missense_variant 0.15
mmpR5 779137 p.Arg50Trp missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.2
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.44
rrs 1472714 n.869A>T non_coding_transcript_exon_variant 0.4
rrs 1472715 n.870C>G non_coding_transcript_exon_variant 0.4
rrs 1472716 n.871C>A non_coding_transcript_exon_variant 0.4
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.27
rrs 1472754 n.909G>T non_coding_transcript_exon_variant 0.27
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.12
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 0.25
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.33
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.32
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 0.32
rrs 1472959 n.1114T>A non_coding_transcript_exon_variant 0.32
rrs 1472963 n.1118G>A non_coding_transcript_exon_variant 0.32
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.28
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.29
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.32
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.3
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.3
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.3
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.3
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.3
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.3
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.3
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.28
rrs 1473051 n.1206T>C non_coding_transcript_exon_variant 0.26
rrs 1473053 n.1208T>G non_coding_transcript_exon_variant 0.27
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.28
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.26
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.26
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.2
rrl 1476360 n.2703C>A non_coding_transcript_exon_variant 0.11
fabG1 1673553 p.Asp38Glu missense_variant 0.19
PPE35 2170065 p.Ala183Gly missense_variant 0.31
fbiD 3339734 p.Ala206Gly missense_variant 0.79
fbiD 3339746 p.Ala210Gly missense_variant 0.23
whiB7 3568428 c.252A>C synonymous_variant 0.15
whiB7 3568431 c.249C>G synonymous_variant 0.18
rpoA 3878597 c.-90G>C upstream_gene_variant 0.2
rpoA 3878613 c.-106A>C upstream_gene_variant 0.22
rpoA 3878618 c.-111A>C upstream_gene_variant 0.22
rpoA 3878641 c.-134C>G upstream_gene_variant 0.2
embC 4240409 p.Pro183Ala missense_variant 0.13
embB 4246584 p.Arg24Pro missense_variant 0.12
embB 4248324 p.Ala604Gly missense_variant 0.21