Run ID: ERR5979811
Sample name:
Date: 02-04-2023 01:24:18
Number of reads: 2837533
Percentage reads mapped: 99.91
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576108 | p.Ala254Gly | missense_variant | 0.37 |
mshA | 576111 | p.Ala255Gly | missense_variant | 0.12 |
mshA | 576482 | p.Val379Leu | missense_variant | 0.16 |
mmpR5 | 779348 | c.363delG | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.14 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.23 |
rpoA | 3878630 | c.-123G>C | upstream_gene_variant | 0.11 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.53 |