TB-Profiler result

Run: ERR5979820

Summary

Run ID: ERR5979820

Sample name:

Date: 02-04-2023 01:24:31

Number of reads: 2964072

Percentage reads mapped: 99.91

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576108 p.Ala254Gly missense_variant 0.2
mmpR5 779342 p.Ala118Asp missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rpoA 3878613 c.-106A>C upstream_gene_variant 0.19
rpoA 3878633 c.-126C>A upstream_gene_variant 0.12
embB 4246584 p.Arg24Pro missense_variant 0.38