Run ID: ERR6865415
Sample name:
Date: 02-04-2023 02:53:24
Number of reads: 1747225
Percentage reads mapped: 99.18
Strain: lineage4.7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576389 | p.Val348Met | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |