Run ID: ERR7363061
Sample name:
Date: 19-05-2023 13:51:45
Number of reads: 2232991
Percentage reads mapped: 99.63
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 9016 | p.Thr572Asn | missense_variant | 1.0 |
gyrA | 9648 | p.Val783Leu | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.21 |
mshA | 576574 | c.1227T>C | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.21 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289780 | c.-539C>T | upstream_gene_variant | 1.0 |
ribD | 2987581 | p.Ser248Cys | missense_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.58 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.2 |
whiB7 | 3568418 | c.250_261delGGACGTCCGCGC | conservative_inframe_deletion | 0.13 |
rpoA | 3878560 | c.-53C>T | upstream_gene_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243412 | c.180C>T | synonymous_variant | 1.0 |
embA | 4244288 | c.1056C>A | synonymous_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.27 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |