Run ID: ERR7764385
Sample name:
Date: 02-04-2023 05:45:50
Number of reads: 3185797
Percentage reads mapped: 99.61
Strain: lineage4.3;lineage4.1.1.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 0.06 |
lineage4.1 | Euro-American | T;X;H | None | 0.92 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 0.91 |
lineage4.1.1.3 | Euro-American (X-type) | X1;X3 | RD193 | 0.9 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.9 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473989 | n.332C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476058 | n.2401T>G | non_coding_transcript_exon_variant | 0.25 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.27 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289017 | c.225T>C | synonymous_variant | 0.91 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.47 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.27 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.88 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.15 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.12 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.12 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.12 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.26 |
embB | 4249408 | c.2895G>A | synonymous_variant | 0.91 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 0.15 |