TB-Profiler result

Run: ERR8975171
Summary

Run ID: ERR8975171

Sample name:

Date: 02-04-2023 08:43:04

Number of reads: 3575073

Percentage reads mapped: 99.69

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
mshA 576209 p.Ala288Thr missense_variant 0.11
mshA 576250 c.903G>A synonymous_variant 0.11
rpoC 763924 c.555G>A synonymous_variant 0.22
fbiC 1304285 p.Ala452Val missense_variant 0.15
fbiC 1304410 p.Asp494Asn missense_variant 0.22
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 0.93
tlyA 1918185 c.246G>A synonymous_variant 0.14
eis 2715042 c.291G>A synonymous_variant 0.14
whiB6 4338595 c.-75delG upstream_gene_variant 1.0