Run ID: ERR9117723
Sample name:
Date: 02-04-2023 09:29:32
Number of reads: 825891
Percentage reads mapped: 74.27
Strain: lineage4.1.1.3.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
lineage4.1.1.3 | Euro-American (X-type) | X1;X3 | RD193 | 1.0 |
lineage4.1.1.3.1 | Euro-American (X-type) | X1;X3 | RD193 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.12 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490751 | c.-32T>G | upstream_gene_variant | 0.15 |
fgd1 | 491027 | p.Asn82Thr | missense_variant | 0.29 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 778079 | c.-911C>T | upstream_gene_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801267 | c.459A>G | synonymous_variant | 0.19 |
fbiC | 1303601 | p.Glu224Gly | missense_variant | 1.0 |
Rv1258c | 1407084 | p.Val86Ala | missense_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472785 | n.940G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472786 | n.941C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474400 | n.743T>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475709 | n.2052T>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1674076 | p.Thr213Pro | missense_variant | 0.33 |
inhA | 1674415 | p.Ala72Thr | missense_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170280 | c.333C>T | synonymous_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289898 | c.-657C>T | upstream_gene_variant | 1.0 |
kasA | 2518151 | p.Ser13Arg | missense_variant | 0.17 |
eis | 2714221 | p.Ala371Val | missense_variant | 0.13 |
eis | 2714943 | c.390C>A | synonymous_variant | 0.15 |
pepQ | 2859722 | c.696delT | frameshift_variant | 0.11 |
ribD | 2986715 | c.-124T>C | upstream_gene_variant | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339688 | p.Thr191Pro | missense_variant | 0.38 |
Rv3083 | 3448999 | p.Pro166Thr | missense_variant | 0.18 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474000 | c.-7C>G | upstream_gene_variant | 0.1 |
fprA | 3475275 | p.Trp423* | stop_gained | 0.22 |
embC | 4240633 | p.Met257Ile | missense_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242774 | p.Leu971Pro | missense_variant | 0.11 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.12 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.12 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.12 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.11 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.11 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
aftB | 4267882 | p.Gly319Arg | missense_variant | 0.15 |
aftB | 4267993 | p.Thr282Ser | missense_variant | 0.14 |
aftB | 4269540 | c.-704C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |