Run ID: ERR9872282
Sample name:
Date: 02-04-2023 13:17:59
Number of reads: 2940565
Percentage reads mapped: 99.97
Strain: lineage4.9
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
katG | 2156110 | p.Val1Ala | missense_variant | 0.86 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
embC | 4242331 | c.2474delG | frameshift_variant | 0.2 |
embB | 4246723 | c.210G>A | synonymous_variant | 0.11 |