TB-Profiler result

Run: ERR9872293
Summary

Run ID: ERR9872293

Sample name:

Date: 02-04-2023 13:18:34

Number of reads: 1909435

Percentage reads mapped: 99.96

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576766 c.1419G>C synonymous_variant 0.11
mshA 576772 c.1425T>A synonymous_variant 0.11
mshA 576778 c.1431G>C synonymous_variant 0.1
Rv1258c 1407523 c.-183G>A upstream_gene_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
kasA 2518606 c.492G>C synonymous_variant 0.13
kasA 2518609 p.Met165Ile missense_variant 0.13
embA 4244292 p.Leu354Val missense_variant 0.11