TB-Profiler result

Run: ERR9882567
Summary

Run ID: ERR9882567

Sample name:

Date: 02-04-2023 13:26:34

Number of reads: 879912

Percentage reads mapped: 99.34

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
fabG1 1673380 c.-60C>G upstream_gene_variant 0.31
PPE35 2170048 p.Leu189Val missense_variant 0.26
PPE35 2170053 p.Thr187Ser missense_variant 0.28
pncA 2290014 c.-773T>C upstream_gene_variant 0.12
kasA 2519041 c.927C>T synonymous_variant 0.1
kasA 2519078 p.Glu322Leu missense_variant 0.17
kasA 2519083 c.970_976delAACGCCA frameshift_variant 0.17
folC 2746796 p.Arg268Gln missense_variant 0.11
embB 4249595 p.Trp1028Gly missense_variant 0.12