TB-Profiler result

Run: ERR9882578
Summary

Run ID: ERR9882578

Sample name:

Date: 02-04-2023 13:24:44

Number of reads: 769168

Percentage reads mapped: 96.02

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576488 p.Val381His missense_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474989 n.1332_1333insA non_coding_transcript_exon_variant 1.0
rrl 1476398 n.2741A>T non_coding_transcript_exon_variant 0.1
fabG1 1673346 c.-94C>G upstream_gene_variant 0.12
fabG1 1673349 c.-91G>C upstream_gene_variant 0.12
fabG1 1673357 c.-83G>A upstream_gene_variant 0.16
fabG1 1673359 c.-81T>C upstream_gene_variant 0.16
fabG1 1673361 c.-79C>G upstream_gene_variant 0.16
fabG1 1673380 c.-60C>G upstream_gene_variant 0.35
PPE35 2170048 p.Leu189Val missense_variant 0.5
PPE35 2170053 p.Thr187Ser missense_variant 0.45
PPE35 2170213 p.Ala134Ser missense_variant 0.1
thyX 3067767 p.Tyr60Cys missense_variant 0.11
fbiB 3642307 p.Leu258Arg missense_variant 0.11
embC 4242224 p.Asn788Asp missense_variant 0.13
embB 4246649 p.Leu46Met missense_variant 0.1
gid 4408239 c.-37A>T upstream_gene_variant 0.11