TB-Profiler result

Run: SRR023430
Summary

Run ID: SRR023430

Sample name:

Date: 02-04-2023 14:11:11

Number of reads: 151353

Percentage reads mapped: 91.29

Strain: lineage4

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7250 c.-52C>A upstream_gene_variant 0.29
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 9129 p.Gln610Glu missense_variant 0.33
fgd1 491591 p.Lys270Met missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpR5 779042 p.Glu18Val missense_variant 0.67
fbiC 1304578 p.Arg550Ser missense_variant 0.5
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
Rv1979c 2222525 p.Gly214Ser missense_variant 0.33
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
Rv2752c 3064748 p.Gly482Ser missense_variant 1.0
Rv2752c 3064751 p.Arg481Cys missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiA 3640379 c.-164T>C upstream_gene_variant 1.0
rpoA 3877658 p.Leu284Ile missense_variant 0.5
embA 4243344 p.Gln38Lys missense_variant 0.67
embB 4249650 p.Ala1046Val missense_variant 1.0
ethA 4327487 c.-14G>A upstream_gene_variant 0.4