Run ID: SRR023438
Sample name:
Date: 02-04-2023 14:11:23
Number of reads: 108022
Percentage reads mapped: 89.57
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
mmpS5 | 778821 | p.Arg29Cys | missense_variant | 0.5 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473531 | n.-127T>A | upstream_gene_variant | 0.33 |
rrl | 1474866 | n.1209C>T | non_coding_transcript_exon_variant | 0.13 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiA | 3640379 | c.-164T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |