TB-Profiler result

Run: SRR023439
Summary

Run ID: SRR023439

Sample name:

Date: 02-04-2023 14:11:26

Number of reads: 243709

Percentage reads mapped: 91.78

Strain: lineage4

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5669 p.Tyr144Asp missense_variant 0.33
gyrA 8043 p.Arg248Cys missense_variant 0.67
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491591 p.Lys270Met missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 1.0
mmpL5 776104 p.Ile793Val missense_variant 0.33
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800701 c.-108G>T upstream_gene_variant 0.5
atpE 1460961 c.-84A>G upstream_gene_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiA 3640379 c.-164T>C upstream_gene_variant 1.0
fbiA 3640429 c.-114C>T upstream_gene_variant 0.22
ddn 3986900 p.Lys19Asn missense_variant 0.5
whiB6 4338595 c.-75delG upstream_gene_variant 1.0