TB-Profiler result

Run: SRR023448
Summary

Run ID: SRR023448

Sample name:

Date: 02-04-2023 14:11:37

Number of reads: 42932

Percentage reads mapped: 75.46

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1473136 n.1291A>T non_coding_transcript_exon_variant 0.4
rpsA 1833976 c.435C>G synonymous_variant 0.67
PPE35 2168497 p.Ile706Val missense_variant 0.5
PPE35 2169790 p.Leu275Val missense_variant 1.0
PPE35 2170711 c.-99T>G upstream_gene_variant 0.2
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiA 3640379 c.-164T>C upstream_gene_variant 1.0
clpC1 4040587 p.Glu40* stop_gained 0.5
ubiA 4269404 p.His144Asn missense_variant 0.67