TB-Profiler result

Run: SRR1163343
Summary

Run ID: SRR1163343

Sample name:

Date: 02-04-2023 23:36:37

Number of reads: 11708

Percentage reads mapped: 98.9

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 9169 p.Leu623Pro missense_variant 1.0
kasA 2518999 c.885G>C synonymous_variant 1.0
ald 3086901 p.Arg28Ser missense_variant 1.0
fprA 3474511 p.Asp169Tyr missense_variant 0.5
fprA 3474527 p.Ala174Gly missense_variant 0.67