Run ID: SRR1172214
Sample name:
Date: 03-04-2023 02:59:25
Number of reads: 26973
Percentage reads mapped: 16.2
Strain: lineage4.9
Drug-resistance: HR-TB
| Drug | Resistance | Supporting mutations |
|---|
| Lineage | Family | Main Spoligotype | RDs | Frequency |
|---|---|---|---|---|
| lineage4 | Euro-American | LAM;T;S;X;H | None | 0.99 |
| lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.99 |
| Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
|---|---|---|---|---|---|
| katG | 2155108 | p.Ile335Thr | missense_variant | 1.0 | isoniazid |
| embB | 4247580 | p.Ala356Val | missense_variant | 1.0 | ethambutol |
| embB | 4247708 | p.Asn399Asp | missense_variant | 1.0 | ethambutol |
| Gene | Chromosome position | Mutation | Type | Estimated fraction |
|---|---|---|---|---|
| gyrB | 6280 | c.1041T>C | synonymous_variant | 1.0 |
| gyrB | 6286 | c.1047T>C | synonymous_variant | 1.0 |
| gyrB | 6292 | c.1053G>A | synonymous_variant | 1.0 |
| gyrB | 6298 | c.1059C>G | synonymous_variant | 1.0 |
| gyrB | 6299 | c.1060C>T | synonymous_variant | 1.0 |
| gyrA | 6307 | c.-995T>G | upstream_gene_variant | 1.0 |
| gyrA | 6316 | c.-986G>C | upstream_gene_variant | 1.0 |
| gyrB | 6326 | p.Ser363Ala | missense_variant | 1.0 |
| gyrA | 6331 | c.-971A>G | upstream_gene_variant | 1.0 |
| gyrA | 6358 | c.-944C>G | upstream_gene_variant | 1.0 |
| gyrA | 6361 | c.-941G>A | upstream_gene_variant | 1.0 |
| gyrA | 6362 | c.-940_-938delTTGinsCTC | upstream_gene_variant | 1.0 |
| gyrA | 6700 | c.-602T>C | upstream_gene_variant | 1.0 |
| gyrA | 6703 | c.-599G>C | upstream_gene_variant | 1.0 |
| gyrA | 6706 | c.-596G>A | upstream_gene_variant | 1.0 |
| gyrA | 6709 | c.-593A>G | upstream_gene_variant | 1.0 |
| gyrA | 6712 | c.-590G>C | upstream_gene_variant | 1.0 |
| gyrA | 6730 | c.-572A>G | upstream_gene_variant | 1.0 |
| gyrA | 6733 | c.-569G>A | upstream_gene_variant | 1.0 |
| gyrA | 6745 | c.-557T>C | upstream_gene_variant | 1.0 |
| gyrA | 6751 | c.-551G>C | upstream_gene_variant | 1.0 |
| gyrA | 6760 | c.-542G>C | upstream_gene_variant | 1.0 |
| gyrA | 6769 | c.-533C>T | upstream_gene_variant | 1.0 |
| gyrA | 6775 | c.-527G>C | upstream_gene_variant | 1.0 |
| gyrA | 7129 | c.-173T>G | upstream_gene_variant | 0.67 |
| gyrA | 7132 | c.-170T>G | upstream_gene_variant | 0.67 |
| gyrA | 7136 | c.-166T>C | upstream_gene_variant | 0.67 |
| gyrA | 7141 | c.-161T>C | upstream_gene_variant | 0.67 |
| gyrA | 7147 | c.-155G>C | upstream_gene_variant | 0.67 |
| gyrA | 7150 | c.-152G>C | upstream_gene_variant | 0.67 |
| gyrA | 7153 | c.-149G>T | upstream_gene_variant | 1.0 |
| gyrA | 7156 | c.-146C>T | upstream_gene_variant | 1.0 |
| gyrA | 7174 | c.-128C>T | upstream_gene_variant | 1.0 |
| gyrA | 7177 | c.-125G>A | upstream_gene_variant | 1.0 |
| gyrA | 7178 | c.-124T>C | upstream_gene_variant | 1.0 |
| gyrA | 7484 | c.183T>C | synonymous_variant | 1.0 |
| gyrA | 7490 | c.189C>G | synonymous_variant | 1.0 |
| gyrA | 7502 | c.201C>T | synonymous_variant | 1.0 |
| gyrA | 7526 | c.225G>T | synonymous_variant | 1.0 |
| gyrA | 7532 | c.231T>C | synonymous_variant | 1.0 |
| gyrA | 7541 | c.240C>G | synonymous_variant | 1.0 |
| gyrA | 7547 | c.246C>T | synonymous_variant | 1.0 |
| gyrA | 8504 | c.1203G>C | synonymous_variant | 1.0 |
| gyrA | 8516 | c.1215T>C | synonymous_variant | 1.0 |
| gyrA | 8519 | c.1218A>G | synonymous_variant | 1.0 |
| gyrA | 8520 | c.1219C>T | synonymous_variant | 1.0 |
| gyrA | 8531 | c.1230G>T | synonymous_variant | 1.0 |
| gyrA | 8535 | p.Glu412Gln | missense_variant | 1.0 |
| gyrA | 8543 | c.1242C>T | synonymous_variant | 1.0 |
| gyrA | 8546 | c.1245T>C | synonymous_variant | 1.0 |
| gyrA | 8555 | c.1254G>C | synonymous_variant | 1.0 |
| gyrA | 8561 | c.1260A>C | synonymous_variant | 1.0 |
| gyrA | 8585 | c.1284C>T | synonymous_variant | 1.0 |
| gyrA | 8588 | c.1287G>A | synonymous_variant | 1.0 |
| gyrA | 8619 | c.1318T>C | synonymous_variant | 1.0 |
| gyrA | 8624 | c.1323G>T | synonymous_variant | 1.0 |
| gyrA | 8627 | c.1326C>A | synonymous_variant | 1.0 |
| gyrA | 8636 | c.1335A>C | synonymous_variant | 1.0 |
| gyrA | 8642 | c.1341A>G | synonymous_variant | 1.0 |
| mshA | 575719 | c.372C>T | synonymous_variant | 1.0 |
| mshA | 575734 | c.387T>G | synonymous_variant | 1.0 |
| mshA | 575746 | c.399C>G | synonymous_variant | 1.0 |
| mshA | 575767 | c.420G>A | synonymous_variant | 1.0 |
| mshA | 575771 | p.Val142Ser | missense_variant | 1.0 |
| mshA | 575779 | p.Glu144Asp | missense_variant | 1.0 |
| mshA | 575780 | p.Pro145Ala | missense_variant | 1.0 |
| ccsA | 620625 | c.735A>C | synonymous_variant | 1.0 |
| ccsA | 620631 | c.741T>G | synonymous_variant | 1.0 |
| ccsA | 620649 | c.759A>G | synonymous_variant | 1.0 |
| ccsA | 620652 | c.762C>G | synonymous_variant | 1.0 |
| ccsA | 620661 | c.771C>G | synonymous_variant | 1.0 |
| ccsA | 620685 | c.795G>A | synonymous_variant | 1.0 |
| ccsA | 620698 | p.Val270Ile | missense_variant | 1.0 |
| ccsA | 620712 | c.822G>C | synonymous_variant | 1.0 |
| ccsA | 620721 | c.831G>A | synonymous_variant | 1.0 |
| ccsA | 620733 | c.843G>C | synonymous_variant | 1.0 |
| ccsA | 620739 | c.849A>G | synonymous_variant | 1.0 |
| ccsA | 620742 | c.852G>C | synonymous_variant | 1.0 |
| ccsA | 620748 | c.858T>C | synonymous_variant | 1.0 |
| ccsA | 620778 | c.888T>C | synonymous_variant | 1.0 |
| ccsA | 620781 | c.891C>G | synonymous_variant | 1.0 |
| ccsA | 620783 | p.Ala298Val | missense_variant | 1.0 |
| ccsA | 620787 | c.897C>A | synonymous_variant | 1.0 |
| ccsA | 620796 | c.906C>G | synonymous_variant | 1.0 |
| rpoB | 760043 | c.237C>T | synonymous_variant | 0.67 |
| rpoB | 760046 | c.240G>C | synonymous_variant | 0.67 |
| rpoB | 760056 | c.250_252delCTCinsTTG | synonymous_variant | 0.67 |
| rpoB | 760070 | c.264T>G | synonymous_variant | 0.67 |
| rpoB | 760091 | c.285G>C | synonymous_variant | 0.6 |
| rpoB | 760101 | c.295T>C | synonymous_variant | 0.8 |
| rpoB | 760109 | c.303C>T | synonymous_variant | 0.8 |
| rpoB | 760112 | c.306T>C | synonymous_variant | 0.8 |
| rpoB | 760118 | c.312T>C | synonymous_variant | 0.8 |
| rpoB | 760121 | c.315T>C | synonymous_variant | 0.8 |
| rpoB | 760130 | p.Asp108Glu | missense_variant | 1.0 |
| rpoB | 760139 | c.333A>G | synonymous_variant | 1.0 |
| rpoB | 760142 | c.336C>G | synonymous_variant | 1.0 |
| rpoB | 760145 | c.339C>G | synonymous_variant | 1.0 |
| rpoB | 760181 | c.375T>A | synonymous_variant | 1.0 |
| rpoB | 760184 | c.378A>G | synonymous_variant | 1.0 |
| rpoB | 760196 | c.390C>G | synonymous_variant | 0.9 |
| rpoB | 760235 | c.429T>C | synonymous_variant | 0.88 |
| rpoB | 760244 | c.438G>C | synonymous_variant | 0.88 |
| rpoB | 760274 | c.468G>A | synonymous_variant | 0.89 |
| rpoB | 760295 | c.489C>T | synonymous_variant | 1.0 |
| rpoB | 760307 | c.501T>C | synonymous_variant | 1.0 |
| rpoB | 760310 | c.504G>C | synonymous_variant | 1.0 |
| rpoB | 760328 | c.522G>C | synonymous_variant | 1.0 |
| rpoB | 760331 | c.525G>C | synonymous_variant | 1.0 |
| rpoB | 760337 | c.531C>G | synonymous_variant | 1.0 |
| rpoB | 760340 | c.534G>T | synonymous_variant | 0.6 |
| rpoB | 760358 | c.552C>G | synonymous_variant | 1.0 |
| rpoB | 760361 | c.555T>C | synonymous_variant | 1.0 |
| rpoB | 760370 | c.564C>G | synonymous_variant | 1.0 |
| rpoB | 760376 | p.Asp190Glu | missense_variant | 1.0 |
| rpoB | 760380 | p.Thr192Leu | missense_variant | 1.0 |
| rpoB | 760403 | c.597C>T | synonymous_variant | 1.0 |
| rpoB | 760412 | c.606C>T | synonymous_variant | 1.0 |
| rpoB | 760418 | c.612G>C | synonymous_variant | 1.0 |
| rpoB | 760424 | c.618C>G | synonymous_variant | 1.0 |
| rpoB | 760430 | c.624T>C | synonymous_variant | 1.0 |
| rpoB | 760472 | c.666C>T | synonymous_variant | 1.0 |
| rpoB | 760475 | c.669A>G | synonymous_variant | 1.0 |
| rpoB | 760478 | c.672C>T | synonymous_variant | 1.0 |
| rpoB | 760481 | c.675G>T | synonymous_variant | 1.0 |
| rpoB | 760484 | c.678A>G | synonymous_variant | 1.0 |
| rpoB | 760493 | c.687C>G | synonymous_variant | 1.0 |
| rpoB | 760655 | c.849A>G | synonymous_variant | 1.0 |
| rpoB | 760661 | c.855A>C | synonymous_variant | 1.0 |
| rpoB | 760670 | c.864G>C | synonymous_variant | 1.0 |
| rpoB | 760674 | c.868T>C | synonymous_variant | 1.0 |
| rpoB | 760679 | c.873A>G | synonymous_variant | 1.0 |
| rpoB | 760683 | c.877T>C | synonymous_variant | 1.0 |
| rpoB | 760724 | c.918T>C | synonymous_variant | 1.0 |
| rpoB | 760730 | c.924T>C | synonymous_variant | 1.0 |
| rpoB | 760748 | c.942C>G | synonymous_variant | 1.0 |
| rpoB | 760757 | c.951T>C | synonymous_variant | 1.0 |
| rpoB | 760759 | p.Val318Ala | missense_variant | 1.0 |
| rpoB | 760769 | c.963C>G | synonymous_variant | 1.0 |
| rpoB | 760793 | c.987A>G | synonymous_variant | 1.0 |
| rpoB | 760805 | c.999G>C | synonymous_variant | 1.0 |
| rpoB | 760817 | c.1011A>G | synonymous_variant | 1.0 |
| rpoB | 760916 | c.1110C>G | synonymous_variant | 1.0 |
| rpoB | 760919 | c.1113C>G | synonymous_variant | 1.0 |
| rpoB | 760925 | c.1119T>C | synonymous_variant | 1.0 |
| rpoB | 760928 | c.1122G>C | synonymous_variant | 1.0 |
| rpoB | 760931 | c.1125C>G | synonymous_variant | 1.0 |
| rpoB | 760937 | c.1131G>A | synonymous_variant | 1.0 |
| rpoB | 760946 | c.1140A>G | synonymous_variant | 1.0 |
| rpoB | 761240 | c.1434C>T | synonymous_variant | 1.0 |
| rpoB | 761249 | c.1443A>G | synonymous_variant | 1.0 |
| rpoB | 761255 | c.1449T>C | synonymous_variant | 1.0 |
| rpoB | 761261 | c.1455G>T | synonymous_variant | 1.0 |
| rpoB | 761264 | c.1458C>G | synonymous_variant | 1.0 |
| rpoB | 761282 | c.1476C>G | synonymous_variant | 1.0 |
| rpoB | 761327 | c.1521A>G | synonymous_variant | 1.0 |
| rpoB | 761345 | c.1539G>T | synonymous_variant | 1.0 |
| rpoB | 761354 | c.1548C>T | synonymous_variant | 1.0 |
| rpoB | 761360 | c.1554T>C | synonymous_variant | 1.0 |
| rpoB | 761362 | p.Ser519Thr | missense_variant | 1.0 |
| rpoB | 761374 | p.Val523Glu | missense_variant | 1.0 |
| rpoB | 761414 | c.1608A>G | synonymous_variant | 1.0 |
| rpoB | 761423 | c.1617T>C | synonymous_variant | 1.0 |
| rpoB | 761432 | c.1626C>T | synonymous_variant | 1.0 |
| rpoB | 761435 | c.1629T>C | synonymous_variant | 1.0 |
| rpoB | 761438 | c.1632G>C | synonymous_variant | 1.0 |
| rpoB | 761891 | c.2085G>C | synonymous_variant | 1.0 |
| rpoB | 761921 | c.2115C>T | synonymous_variant | 1.0 |
| rpoB | 761930 | c.2124G>C | synonymous_variant | 1.0 |
| rpoB | 761954 | c.2148C>G | synonymous_variant | 1.0 |
| rpoB | 761961 | p.Pro719Ser | missense_variant | 0.67 |
| rpoB | 762008 | c.2202C>G | synonymous_variant | 1.0 |
| rpoB | 762014 | c.2208C>T | synonymous_variant | 1.0 |
| rpoB | 762167 | c.2361T>C | synonymous_variant | 1.0 |
| rpoB | 762185 | c.2379G>C | synonymous_variant | 1.0 |
| rpoB | 762266 | c.2460T>C | synonymous_variant | 1.0 |
| rpoB | 762281 | c.2475G>A | synonymous_variant | 1.0 |
| rpoB | 762284 | c.2478G>C | synonymous_variant | 1.0 |
| rpoB | 762293 | c.2487T>C | synonymous_variant | 1.0 |
| rpoB | 762317 | c.2511A>G | synonymous_variant | 1.0 |
| rpoB | 762338 | c.2532T>C | synonymous_variant | 1.0 |
| rpoB | 762341 | c.2535G>C | synonymous_variant | 1.0 |
| rpoB | 762347 | c.2541T>C | synonymous_variant | 1.0 |
| rpoB | 762362 | p.Glu852Asp | missense_variant | 1.0 |
| rpoB | 762369 | c.2563T>C | synonymous_variant | 1.0 |
| rpoC | 763414 | c.45T>G | synonymous_variant | 1.0 |
| rpoC | 763441 | c.72C>T | synonymous_variant | 1.0 |
| rpoC | 763444 | c.75T>C | synonymous_variant | 1.0 |
| rpoC | 763456 | c.87A>G | synonymous_variant | 1.0 |
| rpoC | 763486 | c.117T>G | synonymous_variant | 1.0 |
| rpoC | 763528 | c.159G>A | synonymous_variant | 1.0 |
| rpoC | 763546 | c.177A>G | synonymous_variant | 1.0 |
| rpoC | 763570 | c.201G>C | synonymous_variant | 1.0 |
| rpoC | 763594 | c.225C>T | synonymous_variant | 1.0 |
| rpoC | 763603 | c.234C>T | synonymous_variant | 1.0 |
| rpoC | 763618 | c.249C>T | synonymous_variant | 1.0 |
| rpoC | 763636 | c.267T>C | synonymous_variant | 1.0 |
| rpoC | 763660 | c.291T>G | synonymous_variant | 1.0 |
| rpoC | 763669 | c.300C>G | synonymous_variant | 1.0 |
| rpoC | 763675 | c.306C>G | synonymous_variant | 1.0 |
| rpoC | 763703 | c.334_336delTCGinsAGC | synonymous_variant | 1.0 |
| rpoC | 763709 | c.340C>T | synonymous_variant | 1.0 |
| rpoC | 763714 | c.345G>C | synonymous_variant | 1.0 |
| rpoC | 763726 | c.357C>T | synonymous_variant | 1.0 |
| rpoC | 763732 | c.363C>G | synonymous_variant | 1.0 |
| rpoC | 763741 | c.372C>T | synonymous_variant | 1.0 |
| rpoC | 763744 | c.375G>C | synonymous_variant | 1.0 |
| rpoC | 763765 | c.396T>G | synonymous_variant | 1.0 |
| rpoC | 763771 | c.402C>T | synonymous_variant | 1.0 |
| rpoC | 763780 | c.411C>G | synonymous_variant | 1.0 |
| rpoC | 763792 | p.Glu141Asp | missense_variant | 1.0 |
| rpoC | 763801 | c.432C>G | synonymous_variant | 1.0 |
| rpoC | 763807 | c.438T>C | synonymous_variant | 1.0 |
| rpoC | 764575 | c.1206T>G | synonymous_variant | 1.0 |
| rpoC | 764578 | c.1209C>G | synonymous_variant | 1.0 |
| rpoC | 764593 | c.1224C>T | synonymous_variant | 1.0 |
| rpoC | 764605 | c.1236G>A | synonymous_variant | 0.8 |
| rpoC | 764626 | c.1257C>T | synonymous_variant | 0.8 |
| rpoC | 764650 | c.1281G>T | synonymous_variant | 0.75 |
| rpoC | 764668 | c.1299C>T | synonymous_variant | 0.67 |
| rpoC | 764686 | c.1317C>T | synonymous_variant | 0.67 |
| rpoC | 764752 | c.1383G>C | synonymous_variant | 0.75 |
| rpoC | 764764 | c.1395T>C | synonymous_variant | 0.75 |
| rpoC | 764782 | c.1413C>T | synonymous_variant | 1.0 |
| rpoC | 764797 | c.1428G>C | synonymous_variant | 1.0 |
| rpoC | 764809 | c.1440C>T | synonymous_variant | 1.0 |
| rpoC | 764815 | c.1446A>G | synonymous_variant | 1.0 |
| rpoC | 764902 | c.1533C>T | synonymous_variant | 1.0 |
| rpoC | 764948 | c.1579T>C | synonymous_variant | 1.0 |
| rpoC | 764968 | c.1599T>C | synonymous_variant | 1.0 |
| rpoC | 765013 | c.1644C>T | synonymous_variant | 1.0 |
| rpoC | 765019 | c.1650A>G | synonymous_variant | 1.0 |
| rpoC | 765300 | p.Val644Ala | missense_variant | 1.0 |
| rpoC | 765319 | c.1950A>G | synonymous_variant | 1.0 |
| rpoC | 765328 | p.His653Gln | missense_variant | 1.0 |
| rpoC | 765330 | p.Ser654Asn | missense_variant | 1.0 |
| rpoC | 765334 | c.1965C>T | synonymous_variant | 1.0 |
| rpoC | 765343 | c.1974G>A | synonymous_variant | 1.0 |
| rpoC | 765352 | c.1983G>C | synonymous_variant | 1.0 |
| rpoC | 765452 | p.Ala695Ser | missense_variant | 1.0 |
| rpoC | 765466 | c.2097C>T | synonymous_variant | 1.0 |
| rpoC | 765478 | c.2109T>C | synonymous_variant | 1.0 |
| rpoC | 765493 | c.2124G>C | synonymous_variant | 1.0 |
| rpoC | 765499 | c.2130C>G | synonymous_variant | 1.0 |
| rpoC | 765508 | c.2139C>G | synonymous_variant | 0.67 |
| rpoC | 765517 | c.2148C>G | synonymous_variant | 0.75 |
| rpoC | 765529 | c.2160C>T | synonymous_variant | 0.83 |
| rpoC | 765541 | c.2172C>G | synonymous_variant | 0.8 |
| rpoC | 765553 | c.2184C>T | synonymous_variant | 0.8 |
| rpoC | 765556 | c.2187G>C | synonymous_variant | 0.83 |
| rpoC | 765562 | c.2193G>C | synonymous_variant | 1.0 |
| rpoC | 765578 | c.2209C>T | synonymous_variant | 1.0 |
| rpoC | 765622 | p.Glu751Asp | missense_variant | 0.75 |
| rpoC | 765625 | c.2256C>T | synonymous_variant | 0.67 |
| rpoC | 765628 | c.2259G>C | synonymous_variant | 0.67 |
| rpoC | 765883 | c.2514C>G | synonymous_variant | 1.0 |
| rpoC | 765886 | c.2517C>G | synonymous_variant | 1.0 |
| rpoC | 765892 | c.2523T>C | synonymous_variant | 1.0 |
| rpoC | 765934 | c.2565C>T | synonymous_variant | 1.0 |
| rpoC | 765967 | c.2598C>T | synonymous_variant | 1.0 |
| rpoC | 765982 | c.2613C>G | synonymous_variant | 1.0 |
| rpoC | 765994 | c.2625A>T | synonymous_variant | 1.0 |
| rpoC | 766408 | c.3039C>T | synonymous_variant | 1.0 |
| rpoC | 766426 | c.3057C>T | synonymous_variant | 1.0 |
| rpoC | 766486 | c.3117A>G | synonymous_variant | 1.0 |
| rpoC | 766492 | c.3123T>C | synonymous_variant | 1.0 |
| rpoC | 766522 | c.3153C>G | synonymous_variant | 1.0 |
| rpoC | 766528 | c.3159T>C | synonymous_variant | 1.0 |
| rpoC | 766530 | p.Arg1054Gln | missense_variant | 1.0 |
| rpoC | 766549 | c.3180G>C | synonymous_variant | 1.0 |
| rpoC | 766607 | p.Ile1080Leu | missense_variant | 1.0 |
| rpoC | 766630 | c.3261G>T | synonymous_variant | 1.0 |
| rpoC | 766660 | c.3291G>A | synonymous_variant | 1.0 |
| rpoC | 766666 | c.3297C>G | synonymous_variant | 1.0 |
| rpoC | 766672 | c.3303T>C | synonymous_variant | 1.0 |
| rpoC | 766700 | c.3331C>T | synonymous_variant | 1.0 |
| rpoC | 767206 | c.3837C>G | synonymous_variant | 1.0 |
| rpoC | 767209 | c.3840T>C | synonymous_variant | 1.0 |
| rpoC | 767221 | c.3852C>G | synonymous_variant | 1.0 |
| rpoC | 767230 | c.3861G>C | synonymous_variant | 1.0 |
| rpoC | 767233 | c.3864T>C | synonymous_variant | 1.0 |
| rpoC | 767263 | c.3894T>G | synonymous_variant | 1.0 |
| rpoC | 767264 | p.Ala1299Gln | missense_variant | 1.0 |
| rpoC | 767278 | c.3909T>C | synonymous_variant | 1.0 |
| rpoC | 767281 | c.3912C>G | synonymous_variant | 1.0 |
| rpoC | 767284 | c.3915C>T | synonymous_variant | 1.0 |
| rpsL | 781595 | c.36T>C | synonymous_variant | 1.0 |
| rpsL | 781598 | c.39G>C | synonymous_variant | 1.0 |
| rpsL | 781605 | p.Ile16Val | missense_variant | 1.0 |
| rpsL | 781608 | p.Ser17Ala | missense_variant | 1.0 |
| rpsL | 781616 | c.57C>T | synonymous_variant | 1.0 |
| rpsL | 781628 | c.69T>C | synonymous_variant | 1.0 |
| rpsL | 781655 | c.96T>C | synonymous_variant | 1.0 |
| rpsL | 781658 | c.99A>G | synonymous_variant | 1.0 |
| rpsL | 781682 | c.123T>C | synonymous_variant | 1.0 |
| rpsL | 781715 | c.156T>C | synonymous_variant | 1.0 |
| rpsL | 781718 | c.159C>G | synonymous_variant | 1.0 |
| rpsL | 781721 | c.162C>T | synonymous_variant | 1.0 |
| rpsL | 781728 | c.169T>C | synonymous_variant | 1.0 |
| rpsL | 781736 | c.177T>C | synonymous_variant | 1.0 |
| rpsL | 781751 | c.192G>C | synonymous_variant | 1.0 |
| rpsL | 781754 | c.195G>C | synonymous_variant | 1.0 |
| rpsL | 781760 | c.201T>C | synonymous_variant | 1.0 |
| rpsL | 781766 | c.207C>T | synonymous_variant | 1.0 |
| rpsL | 781772 | c.213C>G | synonymous_variant | 1.0 |
| rpsL | 781793 | c.234G>C | synonymous_variant | 1.0 |
| rpsL | 781808 | c.249C>T | synonymous_variant | 1.0 |
| rpsL | 781832 | c.273T>G | synonymous_variant | 1.0 |
| rpsL | 781835 | c.276T>C | synonymous_variant | 1.0 |
| rpsL | 781883 | c.324G>A | synonymous_variant | 1.0 |
| rpsL | 781886 | c.327C>T | synonymous_variant | 1.0 |
| rpsL | 781916 | c.357T>C | synonymous_variant | 0.67 |
| rpsL | 781929 | p.Gly124Ser | missense_variant | 0.67 |
| rpsL | 781933 | c.374G>A | splice_region_variant&stop_retained_variant | 0.67 |
| rplC | 801222 | c.414T>C | synonymous_variant | 1.0 |
| rplC | 801228 | c.420T>C | synonymous_variant | 1.0 |
| rplC | 801231 | c.423C>T | synonymous_variant | 1.0 |
| rplC | 801246 | c.438C>T | synonymous_variant | 1.0 |
| rplC | 801255 | c.447C>A | synonymous_variant | 1.0 |
| rplC | 801309 | c.501C>G | synonymous_variant | 1.0 |
| rplC | 801312 | c.504G>C | synonymous_variant | 1.0 |
| rplC | 801324 | c.516T>C | synonymous_variant | 1.0 |
| rplC | 801330 | c.522G>T | synonymous_variant | 1.0 |
| rplC | 801333 | c.525G>C | synonymous_variant | 1.0 |
| rplC | 801339 | c.531T>G | synonymous_variant | 1.0 |
| rplC | 801341 | p.Leu178Gln | missense_variant | 1.0 |
| rplC | 801348 | c.540T>G | synonymous_variant | 1.0 |
| rplC | 801349 | p.Leu181Val | missense_variant | 1.0 |
| rplC | 801357 | c.549T>C | synonymous_variant | 1.0 |
| rplC | 801372 | c.564G>A | synonymous_variant | 1.0 |
| fbiC | 1304046 | c.1116C>G | synonymous_variant | 1.0 |
| fbiC | 1304055 | c.1125C>T | synonymous_variant | 1.0 |
| fbiC | 1304061 | c.1131G>C | synonymous_variant | 1.0 |
| fbiC | 1304063 | p.Ala378Asp | missense_variant | 1.0 |
| fbiC | 1304068 | p.Val380Ile | missense_variant | 1.0 |
| fbiC | 1304481 | c.1551T>G | synonymous_variant | 1.0 |
| fbiC | 1304496 | c.1566T>A | synonymous_variant | 1.0 |
| fbiC | 1304499 | c.1569T>G | synonymous_variant | 1.0 |
| fbiC | 1304502 | c.1572G>C | synonymous_variant | 1.0 |
| fbiC | 1304526 | c.1596T>G | synonymous_variant | 1.0 |
| fbiC | 1304532 | c.1602G>C | synonymous_variant | 1.0 |
| fbiC | 1304533 | c.1603T>C | synonymous_variant | 1.0 |
| fbiC | 1304541 | c.1611C>G | synonymous_variant | 1.0 |
| fbiC | 1304544 | c.1614T>C | synonymous_variant | 1.0 |
| fbiC | 1304546 | p.Val539Ala | missense_variant | 1.0 |
| fbiC | 1304559 | p.Glu543Asp | missense_variant | 1.0 |
| fbiC | 1304565 | c.1635C>G | synonymous_variant | 1.0 |
| fbiC | 1304568 | c.1638T>C | synonymous_variant | 1.0 |
| fbiC | 1304574 | c.1644C>G | synonymous_variant | 1.0 |
| fbiC | 1304580 | c.1650T>C | synonymous_variant | 1.0 |
| fbiC | 1304610 | c.1680C>G | synonymous_variant | 1.0 |
| fbiC | 1304613 | c.1683T>A | synonymous_variant | 1.0 |
| fbiC | 1304625 | c.1695C>T | synonymous_variant | 1.0 |
| fbiC | 1304634 | c.1704C>G | synonymous_variant | 1.0 |
| fbiC | 1304640 | c.1710A>C | synonymous_variant | 1.0 |
| fbiC | 1304646 | c.1716T>C | synonymous_variant | 1.0 |
| fbiC | 1305393 | c.2463T>C | synonymous_variant | 1.0 |
| fbiC | 1305397 | p.Glu823Gln | missense_variant | 1.0 |
| fbiC | 1305405 | c.2475A>C | synonymous_variant | 1.0 |
| embR | 1416280 | c.1068A>G | synonymous_variant | 0.67 |
| embR | 1416285 | p.Glu355Gln | missense_variant | 0.67 |
| embR | 1416289 | c.1059G>A | synonymous_variant | 0.67 |
| embR | 1416301 | c.1047C>A | synonymous_variant | 0.67 |
| embR | 1416310 | c.1038G>C | synonymous_variant | 1.0 |
| embR | 1416313 | c.1035A>G | synonymous_variant | 1.0 |
| embR | 1416316 | c.1032C>G | synonymous_variant | 1.0 |
| embR | 1416330 | p.Val340Ile | missense_variant | 0.67 |
| embR | 1416332 | p.Tyr339Phe | missense_variant | 0.67 |
| embR | 1416335 | p.Asn338Ser | missense_variant | 0.67 |
| embR | 1416343 | c.1005G>C | synonymous_variant | 0.67 |
| embR | 1416364 | c.984C>T | synonymous_variant | 1.0 |
| atpE | 1460855 | c.-190T>C | upstream_gene_variant | 1.0 |
| atpE | 1460858 | c.-187C>G | upstream_gene_variant | 1.0 |
| atpE | 1460882 | c.-163T>C | upstream_gene_variant | 1.0 |
| atpE | 1460894 | c.-151A>G | upstream_gene_variant | 1.0 |
| atpE | 1460895 | c.-150_-148delGCAinsTCC | upstream_gene_variant | 1.0 |
| atpE | 1460900 | c.-145T>C | upstream_gene_variant | 1.0 |
| atpE | 1460904 | c.-141C>T | upstream_gene_variant | 1.0 |
| atpE | 1460918 | c.-127A>G | upstream_gene_variant | 1.0 |
| atpE | 1460927 | c.-118C>G | upstream_gene_variant | 1.0 |
| rrs | 1471923 | n.78T>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1471925 | n.80T>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1471932 | n.87A>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1471970 | n.125G>A | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472040 | n.195T>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472445 | n.601_604delTCTC | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472451 | n.606_607insCGGG | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472460 | n.615T>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472461 | n.616G>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472463 | n.618G>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472489 | n.644A>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472686 | n.841G>A | non_coding_transcript_exon_variant | 0.67 |
| rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.8 |
| rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.8 |
| rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.8 |
| rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.8 |
| rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1473288 | n.1443C>T | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473403 | n.-255C>T | upstream_gene_variant | 1.0 |
| rrl | 1473408 | n.-250C>T | upstream_gene_variant | 1.0 |
| rrl | 1473417 | n.-241C>T | upstream_gene_variant | 1.0 |
| rrl | 1473420 | n.-238A>G | upstream_gene_variant | 1.0 |
| rrl | 1473421 | n.-237G>A | upstream_gene_variant | 1.0 |
| rrl | 1473437 | n.-221T>C | upstream_gene_variant | 1.0 |
| rrl | 1473449 | n.-209G>A | upstream_gene_variant | 1.0 |
| rrl | 1473454 | n.-204A>G | upstream_gene_variant | 1.0 |
| rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473797 | n.140G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473813 | n.156C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473831 | n.174G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474011 | n.354G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474018 | n.361G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474089 | n.432C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474093 | n.436G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474100 | n.443C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474110 | n.453A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474111 | n.454T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474130 | n.473C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474753 | n.1096A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475480 | n.1823A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475487 | n.1830C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475604 | n.1947A>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475605 | n.1948A>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475617 | n.1960C>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475625 | n.1968G>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475637 | n.1980T>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475760 | n.2103C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475999 | n.2342G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476032 | n.2375C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476033 | n.2376T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476034 | n.2377C>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476045 | n.2388G>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476047 | n.2390G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476077 | n.2420T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476095 | n.2438C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 1.0 |
| rpsA | 1833343 | c.-199G>C | upstream_gene_variant | 1.0 |
| rpsA | 1833352 | c.-190C>G | upstream_gene_variant | 1.0 |
| rpsA | 1833356 | c.-186_-185delAGinsTC | upstream_gene_variant | 1.0 |
| rpsA | 1833661 | c.120A>G | synonymous_variant | 1.0 |
| rpsA | 1833667 | c.126C>G | synonymous_variant | 1.0 |
| rpsA | 1833703 | c.162C>T | synonymous_variant | 1.0 |
| rpsA | 1833724 | c.183C>G | synonymous_variant | 1.0 |
| rpsA | 1833727 | c.186G>C | synonymous_variant | 1.0 |
| rpsA | 1833745 | c.204G>C | synonymous_variant | 1.0 |
| rpsA | 1833760 | c.219C>T | synonymous_variant | 1.0 |
| rpsA | 1833790 | c.249T>C | synonymous_variant | 0.75 |
| rpsA | 1833793 | c.252C>T | synonymous_variant | 0.67 |
| rpsA | 1833802 | c.261A>G | synonymous_variant | 0.67 |
| rpsA | 1833808 | c.267G>C | synonymous_variant | 0.67 |
| rpsA | 1833811 | c.270G>T | synonymous_variant | 0.75 |
| rpsA | 1833832 | c.291G>A | synonymous_variant | 0.75 |
| rpsA | 1833838 | c.297G>C | synonymous_variant | 0.75 |
| rpsA | 1833841 | c.300C>G | synonymous_variant | 0.75 |
| rpsA | 1833847 | c.306C>G | synonymous_variant | 0.75 |
| rpsA | 1833856 | c.315A>G | synonymous_variant | 0.75 |
| rpsA | 1833859 | c.318C>T | synonymous_variant | 0.75 |
| rpsA | 1833874 | c.333T>C | synonymous_variant | 0.75 |
| rpsA | 1833895 | c.354G>C | synonymous_variant | 1.0 |
| rpsA | 1834015 | c.474G>C | synonymous_variant | 0.75 |
| rpsA | 1834021 | c.480C>T | synonymous_variant | 0.8 |
| rpsA | 1834098 | p.Ser186Tyr | missense_variant | 0.5 |
| rpsA | 1834102 | c.561T>C | synonymous_variant | 1.0 |
| rpsA | 1834105 | c.564C>T | synonymous_variant | 1.0 |
| rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
| rpsA | 1834186 | c.645C>G | synonymous_variant | 1.0 |
| rpsA | 1834189 | c.648G>C | synonymous_variant | 1.0 |
| rpsA | 1834195 | c.654G>C | synonymous_variant | 1.0 |
| rpsA | 1834222 | c.681T>C | synonymous_variant | 1.0 |
| rpsA | 1834225 | c.684C>G | synonymous_variant | 1.0 |
| rpsA | 1834231 | c.690T>G | synonymous_variant | 1.0 |
| rpsA | 1834249 | c.708T>C | synonymous_variant | 1.0 |
| rpsA | 1834261 | c.720A>G | synonymous_variant | 1.0 |
| rpsA | 1834264 | c.723G>C | synonymous_variant | 1.0 |
| rpsA | 1834297 | c.756C>T | synonymous_variant | 1.0 |
| rpsA | 1834303 | c.762T>G | synonymous_variant | 1.0 |
| rpsA | 1834306 | c.765T>C | synonymous_variant | 1.0 |
| rpsA | 1834336 | c.795C>G | synonymous_variant | 1.0 |
| rpsA | 1834348 | c.807T>C | synonymous_variant | 1.0 |
| rpsA | 1834357 | c.816T>C | synonymous_variant | 1.0 |
| rpsA | 1834366 | c.825A>G | synonymous_variant | 1.0 |
| rpsA | 1834375 | c.834G>A | synonymous_variant | 1.0 |
| rpsA | 1834396 | c.855G>T | synonymous_variant | 1.0 |
| rpsA | 1834411 | c.870T>C | synonymous_variant | 1.0 |
| rpsA | 1834423 | c.882G>T | synonymous_variant | 1.0 |
| rpsA | 1834451 | c.910T>C | synonymous_variant | 1.0 |
| rpsA | 1834456 | c.915T>G | synonymous_variant | 1.0 |
| rpsA | 1834465 | c.924T>C | synonymous_variant | 1.0 |
| rpsA | 1834468 | c.927A>G | synonymous_variant | 1.0 |
| rpsA | 1834477 | c.936C>T | synonymous_variant | 1.0 |
| rpsA | 1834489 | c.948T>C | synonymous_variant | 1.0 |
| rpsA | 1834519 | c.978G>C | synonymous_variant | 1.0 |
| rpsA | 1834546 | c.1005T>C | synonymous_variant | 1.0 |
| rpsA | 1834555 | c.1014T>G | synonymous_variant | 1.0 |
| katG | 2155047 | c.1065C>G | synonymous_variant | 1.0 |
| katG | 2155054 | p.Tyr353Phe | missense_variant | 1.0 |
| katG | 2155056 | c.1056A>G | synonymous_variant | 1.0 |
| katG | 2155062 | c.1050T>C | synonymous_variant | 1.0 |
| katG | 2155068 | c.1044T>G | synonymous_variant | 1.0 |
| katG | 2155071 | c.1041T>G | synonymous_variant | 1.0 |
| katG | 2155080 | c.1032G>C | synonymous_variant | 1.0 |
| katG | 2155083 | c.1029G>C | synonymous_variant | 1.0 |
| katG | 2155086 | c.1026G>A | synonymous_variant | 1.0 |
| katG | 2155119 | c.993T>C | synonymous_variant | 1.0 |
| katG | 2155131 | c.981A>G | synonymous_variant | 1.0 |
| katG | 2155134 | c.978G>C | synonymous_variant | 1.0 |
| katG | 2155656 | c.456G>A | synonymous_variant | 1.0 |
| katG | 2155661 | p.Val151Ile | missense_variant | 1.0 |
| kasA | 2517941 | c.-174C>G | upstream_gene_variant | 1.0 |
| kasA | 2517950 | c.-165C>G | upstream_gene_variant | 1.0 |
| kasA | 2517962 | c.-153C>G | upstream_gene_variant | 1.0 |
| kasA | 2517965 | c.-150C>T | upstream_gene_variant | 1.0 |
| kasA | 2517974 | c.-141T>C | upstream_gene_variant | 1.0 |
| kasA | 2518019 | c.-96A>G | upstream_gene_variant | 1.0 |
| kasA | 2518025 | c.-90G>C | upstream_gene_variant | 1.0 |
| kasA | 2518031 | c.-84G>T | upstream_gene_variant | 1.0 |
| kasA | 2518034 | c.-81T>C | upstream_gene_variant | 1.0 |
| kasA | 2518040 | c.-75G>T | upstream_gene_variant | 1.0 |
| kasA | 2518041 | c.-74T>C | upstream_gene_variant | 1.0 |
| kasA | 2518049 | c.-66G>C | upstream_gene_variant | 1.0 |
| kasA | 2518053 | c.-62_-60delATTinsCTG | upstream_gene_variant | 1.0 |
| kasA | 2518073 | c.-42T>G | upstream_gene_variant | 1.0 |
| kasA | 2518085 | c.-30C>T | upstream_gene_variant | 1.0 |
| kasA | 2518162 | c.48G>A | synonymous_variant | 1.0 |
| kasA | 2518169 | p.Val19Leu | missense_variant | 1.0 |
| kasA | 2518172 | p.Thr20Ala | missense_variant | 1.0 |
| kasA | 2518190 | p.Ser26Ala | missense_variant | 1.0 |
| kasA | 2518199 | p.Ile29Val | missense_variant | 1.0 |
| kasA | 2518219 | c.105T>C | synonymous_variant | 1.0 |
| kasA | 2518220 | c.106C>T | synonymous_variant | 1.0 |
| kasA | 2518245 | p.His44Arg | missense_variant | 1.0 |
| kasA | 2518248 | p.Ala45Val | missense_variant | 1.0 |
| kasA | 2519152 | c.1038G>C | synonymous_variant | 1.0 |
| kasA | 2519161 | c.1047G>A | synonymous_variant | 1.0 |
| kasA | 2519167 | c.1053T>G | synonymous_variant | 1.0 |
| ahpC | 2726591 | c.399C>G | synonymous_variant | 1.0 |
| ahpC | 2726600 | c.408T>C | synonymous_variant | 0.75 |
| ahpC | 2726627 | c.435G>A | synonymous_variant | 0.75 |
| ahpC | 2726645 | c.453C>G | synonymous_variant | 0.75 |
| ahpC | 2726654 | c.462G>C | synonymous_variant | 0.75 |
| ahpC | 2726657 | c.465A>G | synonymous_variant | 0.75 |
| ahpC | 2726660 | c.468C>T | synonymous_variant | 0.75 |
| ahpC | 2726669 | c.477T>C | synonymous_variant | 0.75 |
| ahpC | 2726675 | c.483A>G | synonymous_variant | 0.75 |
| ahpC | 2726681 | c.489A>G | synonymous_variant | 0.75 |
| Rv2752c | 3064974 | c.1218T>C | synonymous_variant | 1.0 |
| Rv2752c | 3064989 | c.1203G>C | synonymous_variant | 1.0 |
| Rv2752c | 3064998 | c.1194A>C | synonymous_variant | 1.0 |
| Rv2752c | 3065040 | c.1150_1152delCTCinsTTG | synonymous_variant | 1.0 |
| Rv2752c | 3065049 | c.1143G>A | synonymous_variant | 1.0 |
| Rv2752c | 3065055 | c.1137T>G | synonymous_variant | 1.0 |
| Rv2752c | 3065064 | c.1128G>C | synonymous_variant | 0.75 |
| Rv2752c | 3065070 | c.1122C>A | synonymous_variant | 0.67 |
| Rv2752c | 3065073 | c.1119C>G | synonymous_variant | 0.67 |
| Rv2752c | 3065085 | c.1105_1107delAGGinsCGC | synonymous_variant | 0.6 |
| Rv2752c | 3065097 | c.1095C>T | synonymous_variant | 0.6 |
| Rv2752c | 3065109 | c.1081_1083delAGAinsCGG | synonymous_variant | 0.6 |
| thyX | 3067761 | p.Arg62Lys | missense_variant | 1.0 |
| thyX | 3067765 | p.Leu61Ile | missense_variant | 1.0 |
| thyX | 3067781 | c.165C>G | synonymous_variant | 1.0 |
| ald | 3087672 | p.His285Asp | missense_variant | 1.0 |
| ald | 3087686 | c.867C>G | synonymous_variant | 1.0 |
| ald | 3087692 | c.873C>T | synonymous_variant | 1.0 |
| ald | 3087699 | p.Leu294Met | missense_variant | 1.0 |
| ald | 3087726 | p.Ala303Ser | missense_variant | 1.0 |
| ald | 3087729 | p.Ser304Ala | missense_variant | 1.0 |
| ald | 3087734 | c.915G>T | synonymous_variant | 1.0 |
| ald | 3087743 | c.924G>C | synonymous_variant | 1.0 |
| ald | 3087761 | c.942C>G | synonymous_variant | 1.0 |
| fprA | 3474123 | c.117G>C | synonymous_variant | 1.0 |
| fprA | 3474126 | c.120G>A | synonymous_variant | 1.0 |
| fprA | 3474138 | c.132T>G | synonymous_variant | 1.0 |
| fprA | 3474141 | c.135C>G | synonymous_variant | 1.0 |
| fprA | 3474156 | c.150C>T | synonymous_variant | 1.0 |
| fprA | 3474162 | c.156G>C | synonymous_variant | 1.0 |
| fprA | 3474171 | c.165G>C | synonymous_variant | 1.0 |
| fprA | 3474174 | c.168T>C | synonymous_variant | 1.0 |
| fprA | 3474204 | c.198A>G | synonymous_variant | 1.0 |
| fprA | 3474210 | c.204A>G | synonymous_variant | 1.0 |
| rpoA | 3877692 | c.816G>C | synonymous_variant | 1.0 |
| rpoA | 3877704 | c.804G>T | synonymous_variant | 1.0 |
| rpoA | 3877737 | c.771G>C | synonymous_variant | 1.0 |
| rpoA | 3877758 | c.750G>C | synonymous_variant | 0.67 |
| rpoA | 3877764 | c.744C>G | synonymous_variant | 0.67 |
| rpoA | 3877815 | c.693C>T | synonymous_variant | 0.67 |
| rpoA | 3877839 | c.669G>C | synonymous_variant | 0.6 |
| rpoA | 3877851 | c.657C>T | synonymous_variant | 0.67 |
| rpoA | 3877857 | c.651G>A | synonymous_variant | 0.75 |
| rpoA | 3877865 | c.643C>T | synonymous_variant | 0.75 |
| rpoA | 3877866 | c.642G>C | synonymous_variant | 0.75 |
| rpoA | 3877872 | c.636C>T | synonymous_variant | 0.75 |
| rpoA | 3877875 | c.633T>C | synonymous_variant | 0.75 |
| rpoA | 3877887 | c.621G>C | synonymous_variant | 0.83 |
| rpoA | 3877900 | p.Ser203Thr | missense_variant | 0.83 |
| rpoA | 3877905 | c.603A>G | synonymous_variant | 0.8 |
| rpoA | 3877908 | p.Asn200Ser | missense_variant | 0.8 |
| rpoA | 3877920 | c.588G>C | synonymous_variant | 0.83 |
| rpoA | 3877962 | c.546G>T | synonymous_variant | 1.0 |
| rpoA | 3877968 | c.540C>G | synonymous_variant | 1.0 |
| rpoA | 3877989 | c.519A>G | synonymous_variant | 1.0 |
| rpoA | 3878001 | c.507A>G | synonymous_variant | 1.0 |
| rpoA | 3878022 | c.486T>C | synonymous_variant | 1.0 |
| rpoA | 3878025 | c.483C>T | synonymous_variant | 1.0 |
| rpoA | 3878028 | c.480G>C | synonymous_variant | 1.0 |
| rpoA | 3878031 | c.477T>C | synonymous_variant | 1.0 |
| rpoA | 3878043 | c.465G>C | synonymous_variant | 1.0 |
| rpoA | 3878046 | c.462T>G | synonymous_variant | 1.0 |
| rpoA | 3878055 | c.453A>G | synonymous_variant | 1.0 |
| rpoA | 3878061 | c.447G>C | synonymous_variant | 1.0 |
| rpoA | 3878067 | c.441C>G | synonymous_variant | 1.0 |
| rpoA | 3878070 | c.438T>C | synonymous_variant | 1.0 |
| rpoA | 3878364 | c.144A>C | synonymous_variant | 1.0 |
| rpoA | 3878370 | c.138T>C | synonymous_variant | 1.0 |
| rpoA | 3878376 | c.132G>C | synonymous_variant | 1.0 |
| rpoA | 3878384 | c.124C>T | synonymous_variant | 1.0 |
| rpoA | 3878385 | c.123C>G | synonymous_variant | 1.0 |
| rpoA | 3878391 | c.117T>G | synonymous_variant | 1.0 |
| rpoA | 3878418 | c.90C>T | synonymous_variant | 1.0 |
| rpoA | 3878442 | c.66G>C | synonymous_variant | 1.0 |
| rpoA | 3878454 | c.54A>G | synonymous_variant | 1.0 |
| rpoA | 3878458 | p.Asn17Ser | missense_variant | 1.0 |
| rpoA | 3878471 | p.Val13Leu | missense_variant | 1.0 |
| rpoA | 3878472 | p.Asp12Glu | missense_variant | 1.0 |
| rpoA | 3878484 | c.24C>A | synonymous_variant | 1.0 |
| rpoA | 3878490 | c.18C>A | synonymous_variant | 1.0 |
| rpoA | 3878496 | c.12A>T | synonymous_variant | 1.0 |
| clpC1 | 4038388 | c.2317T>C | synonymous_variant | 1.0 |
| clpC1 | 4038398 | c.2307G>T | synonymous_variant | 1.0 |
| clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
| clpC1 | 4038456 | p.Val750Glu | missense_variant | 1.0 |
| clpC1 | 4038486 | p.Gly740Asn | missense_variant | 1.0 |
| clpC1 | 4038491 | c.2214C>T | synonymous_variant | 1.0 |
| clpC1 | 4038502 | p.Ile735Val | missense_variant | 1.0 |
| clpC1 | 4038508 | c.2197C>T | synonymous_variant | 1.0 |
| clpC1 | 4038518 | c.2187G>T | synonymous_variant | 1.0 |
| clpC1 | 4038530 | p.Glu725Asp | missense_variant | 1.0 |
| clpC1 | 4038537 | p.Thr723Ser | missense_variant | 1.0 |
| clpC1 | 4038539 | c.2166G>C | synonymous_variant | 1.0 |
| clpC1 | 4038569 | c.2136C>T | synonymous_variant | 1.0 |
| clpC1 | 4038575 | c.2130C>G | synonymous_variant | 1.0 |
| clpC1 | 4038596 | c.2109A>G | synonymous_variant | 1.0 |
| clpC1 | 4038620 | c.2085G>A | synonymous_variant | 0.67 |
| clpC1 | 4038623 | c.2082A>G | synonymous_variant | 0.67 |
| clpC1 | 4038997 | c.1708T>C | synonymous_variant | 1.0 |
| clpC1 | 4039004 | c.1701C>G | synonymous_variant | 1.0 |
| clpC1 | 4039022 | c.1683A>G | synonymous_variant | 1.0 |
| clpC1 | 4039025 | c.1680C>G | synonymous_variant | 1.0 |
| clpC1 | 4039067 | c.1638G>C | synonymous_variant | 1.0 |
| clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.75 |
| clpC1 | 4039190 | c.1515C>G | synonymous_variant | 1.0 |
| clpC1 | 4039193 | c.1512C>G | synonymous_variant | 1.0 |
| clpC1 | 4039223 | c.1482C>T | synonymous_variant | 0.75 |
| clpC1 | 4039226 | c.1479T>C | synonymous_variant | 0.75 |
| clpC1 | 4039238 | c.1467C>T | synonymous_variant | 0.75 |
| clpC1 | 4039243 | c.1462C>T | synonymous_variant | 0.75 |
| clpC1 | 4039259 | c.1446G>A | synonymous_variant | 0.75 |
| clpC1 | 4039262 | c.1443C>T | synonymous_variant | 0.75 |
| clpC1 | 4039268 | c.1437C>T | synonymous_variant | 0.75 |
| clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.75 |
| clpC1 | 4039328 | c.1377A>C | synonymous_variant | 1.0 |
| clpC1 | 4039338 | p.Thr456Gln | missense_variant | 1.0 |
| clpC1 | 4039361 | c.1344C>A | synonymous_variant | 1.0 |
| clpC1 | 4039382 | c.1323C>T | synonymous_variant | 1.0 |
| clpC1 | 4039391 | c.1314T>G | synonymous_variant | 1.0 |
| clpC1 | 4039409 | c.1296T>C | synonymous_variant | 1.0 |
| clpC1 | 4039412 | c.1293T>A | synonymous_variant | 1.0 |
| clpC1 | 4039415 | p.Glu430Asp | missense_variant | 1.0 |
| clpC1 | 4039664 | c.1041G>C | synonymous_variant | 1.0 |
| clpC1 | 4039670 | c.1035G>C | synonymous_variant | 1.0 |
| clpC1 | 4039694 | c.1011G>C | synonymous_variant | 1.0 |
| clpC1 | 4039805 | c.900C>G | synonymous_variant | 1.0 |
| clpC1 | 4039817 | c.888A>T | synonymous_variant | 1.0 |
| clpC1 | 4039820 | c.885T>C | synonymous_variant | 1.0 |
| clpC1 | 4039826 | c.879C>G | synonymous_variant | 1.0 |
| clpC1 | 4039831 | c.874T>C | synonymous_variant | 1.0 |
| clpC1 | 4039832 | c.873C>T | synonymous_variant | 1.0 |
| clpC1 | 4039850 | c.855T>C | synonymous_variant | 1.0 |
| clpC1 | 4039865 | c.840T>C | synonymous_variant | 1.0 |
| clpC1 | 4039898 | c.807C>G | synonymous_variant | 1.0 |
| clpC1 | 4040000 | c.705C>T | synonymous_variant | 1.0 |
| clpC1 | 4040309 | c.396C>T | synonymous_variant | 1.0 |
| clpC1 | 4040342 | c.363C>G | synonymous_variant | 1.0 |
| clpC1 | 4040348 | c.357G>C | synonymous_variant | 1.0 |
| clpC1 | 4040354 | c.351A>G | synonymous_variant | 1.0 |
| clpC1 | 4040357 | c.348T>C | synonymous_variant | 1.0 |
| clpC1 | 4040363 | c.342A>C | synonymous_variant | 1.0 |
| clpC1 | 4040369 | c.336C>G | synonymous_variant | 1.0 |
| clpC1 | 4040480 | c.225T>C | synonymous_variant | 1.0 |
| clpC1 | 4040486 | c.219G>C | synonymous_variant | 1.0 |
| clpC1 | 4040495 | c.210C>A | synonymous_variant | 1.0 |
| clpC1 | 4040522 | c.183T>C | synonymous_variant | 1.0 |
| clpC1 | 4040525 | c.180C>T | synonymous_variant | 1.0 |
| clpC1 | 4040528 | c.177G>C | synonymous_variant | 1.0 |
| clpC1 | 4040531 | c.174T>C | synonymous_variant | 1.0 |
| clpC1 | 4040534 | c.171A>G | synonymous_variant | 1.0 |
| clpC1 | 4040537 | c.168G>C | synonymous_variant | 1.0 |
| clpC1 | 4040551 | c.154T>C | synonymous_variant | 1.0 |
| clpC1 | 4040561 | c.144A>G | synonymous_variant | 1.0 |
| clpC1 | 4040573 | c.132T>A | synonymous_variant | 1.0 |
| clpC1 | 4040579 | c.126A>G | synonymous_variant | 1.0 |
| embC | 4241095 | c.1233C>T | synonymous_variant | 1.0 |
| embC | 4241101 | c.1239G>C | synonymous_variant | 1.0 |
| embC | 4241121 | p.Ser420Asn | missense_variant | 1.0 |
| embC | 4241137 | c.1275G>C | synonymous_variant | 1.0 |
| embC | 4241146 | c.1284C>G | synonymous_variant | 1.0 |
| embC | 4241153 | p.Ile431Val | missense_variant | 1.0 |
| embC | 4241158 | c.1296T>C | synonymous_variant | 1.0 |
| embC | 4241161 | c.1299C>G | synonymous_variant | 1.0 |
| embC | 4241162 | c.1300T>C | synonymous_variant | 1.0 |
| embC | 4241185 | c.1323G>C | synonymous_variant | 1.0 |
| embC | 4241188 | c.1326C>T | synonymous_variant | 1.0 |
| embC | 4241194 | c.1332C>G | synonymous_variant | 1.0 |
| embC | 4241197 | c.1335G>C | synonymous_variant | 1.0 |
| embC | 4241200 | c.1338C>T | synonymous_variant | 1.0 |
| embC | 4241203 | c.1341T>C | synonymous_variant | 1.0 |
| embC | 4241206 | c.1344G>C | synonymous_variant | 1.0 |
| embA | 4242691 | c.-542C>T | upstream_gene_variant | 1.0 |
| embC | 4242704 | p.Asp948Asn | missense_variant | 1.0 |
| embA | 4242709 | c.-524C>T | upstream_gene_variant | 1.0 |
| embC | 4242710 | p.Gln950Glu | missense_variant | 1.0 |
| embA | 4242715 | c.-518T>C | upstream_gene_variant | 1.0 |
| embA | 4242716 | c.-517C>T | upstream_gene_variant | 1.0 |
| embA | 4242739 | c.-494C>G | upstream_gene_variant | 1.0 |
| embC | 4242740 | p.Leu960Val | missense_variant | 1.0 |
| embA | 4242745 | c.-488A>G | upstream_gene_variant | 1.0 |
| embA | 4242748 | c.-485A>G | upstream_gene_variant | 1.0 |
| embA | 4242757 | c.-476T>C | upstream_gene_variant | 1.0 |
| embC | 4242762 | p.Arg967His | missense_variant | 1.0 |
| embC | 4242764 | p.Val968Leu | missense_variant | 1.0 |
| embC | 4242779 | p.Asn973Gln | missense_variant | 1.0 |
| embA | 4242787 | c.-446G>C | upstream_gene_variant | 1.0 |
| embB | 4247470 | c.957T>C | synonymous_variant | 1.0 |
| embB | 4247497 | c.984T>C | synonymous_variant | 1.0 |
| embB | 4247500 | c.987C>G | synonymous_variant | 1.0 |
| embB | 4247506 | c.993C>G | synonymous_variant | 1.0 |
| embB | 4247512 | c.999T>C | synonymous_variant | 1.0 |
| embB | 4247527 | c.1014G>C | synonymous_variant | 1.0 |
| embB | 4247539 | c.1026T>C | synonymous_variant | 1.0 |
| embB | 4247550 | p.Ala346Asp | missense_variant | 1.0 |
| embB | 4247554 | c.1041T>C | synonymous_variant | 1.0 |
| embB | 4247566 | c.1053C>G | synonymous_variant | 1.0 |
| embB | 4247572 | c.1059A>C | synonymous_variant | 1.0 |
| embB | 4247590 | c.1077A>G | synonymous_variant | 1.0 |
| embB | 4247684 | c.1171T>C | synonymous_variant | 1.0 |
| embB | 4247722 | c.1209G>T | synonymous_variant | 1.0 |
| embB | 4247725 | c.1212G>C | synonymous_variant | 1.0 |
| embB | 4247729 | p.Gly406Pro | missense_variant | 1.0 |
| embB | 4247753 | p.Val414Ile | missense_variant | 1.0 |
| embB | 4247761 | c.1248T>C | synonymous_variant | 1.0 |
| embB | 4247764 | c.1251G>A | synonymous_variant | 1.0 |
| embB | 4247776 | c.1263G>T | synonymous_variant | 1.0 |
| embB | 4248007 | c.1494C>A | synonymous_variant | 0.75 |
| embB | 4248035 | p.Val508Ile | missense_variant | 0.8 |
| embB | 4248041 | p.Ala510Thr | missense_variant | 0.8 |
| embB | 4248044 | p.Lys511Ala | missense_variant | 1.0 |
| embB | 4248055 | c.1542G>C | synonymous_variant | 1.0 |
| embB | 4248064 | c.1551G>C | synonymous_variant | 1.0 |
| embB | 4248070 | c.1557T>C | synonymous_variant | 1.0 |
| embB | 4248085 | c.1572T>C | synonymous_variant | 1.0 |
| embB | 4248097 | c.1584C>G | synonymous_variant | 1.0 |
| ethA | 4327389 | p.Thr29Ser | missense_variant | 1.0 |
| ethR | 4327396 | c.-153A>C | upstream_gene_variant | 1.0 |
| ethA | 4327399 | p.Asp25Glu | missense_variant | 1.0 |
| ethR | 4327414 | c.-135G>T | upstream_gene_variant | 1.0 |
| ethR | 4327420 | c.-129G>A | upstream_gene_variant | 1.0 |
| ethR | 4327423 | c.-126G>C | upstream_gene_variant | 1.0 |
| ethR | 4327435 | c.-114T>G | upstream_gene_variant | 1.0 |
| ethR | 4327438 | c.-111A>G | upstream_gene_variant | 1.0 |
| ethR | 4327453 | c.-96A>G | upstream_gene_variant | 1.0 |
