TB-Profiler result

Run: SRR1180146
Summary

Run ID: SRR1180146

Sample name:

Date: 03-04-2023 03:48:51

Number of reads: 4545799

Percentage reads mapped: 99.83

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576270 p.Ser308Leu missense_variant 0.12
ccsA 619783 c.-108C>A upstream_gene_variant 0.33
mmpL5 777338 p.Lys381Asn missense_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
kasA 2519057 p.Thr315Ser missense_variant 0.17
pepQ 2860179 c.240G>A synonymous_variant 0.22
embA 4244488 p.Ala419Val missense_variant 0.15