TB-Profiler result

Run: SRR1182972
Summary

Run ID: SRR1182972

Sample name:

Date: 03-04-2023 04:59:57

Number of reads: 4487887

Percentage reads mapped: 99.83

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
ccsA 620026 p.Pro46Thr missense_variant 0.17
mmpL5 777340 p.Lys381Gln missense_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 0.99
embA 4243700 c.468C>A synonymous_variant 0.17