Run ID: SRR11972284
Sample name:
Date: 03-04-2023 05:34:44
Number of reads: 98592
Percentage reads mapped: 99.48
Strain:
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
thyX | 3067961 | c.-16C>T | upstream_gene_variant | 1.0 | para-aminosalicylic_acid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.67 |
rpoB | 761518 | p.Asp571Ala | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
fbiC | 1305283 | p.Gln785* | stop_gained | 0.67 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
embR | 1417099 | c.249C>A | synonymous_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475487 | n.1830C>T | non_coding_transcript_exon_variant | 0.5 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289698 | c.-458delT | upstream_gene_variant | 0.33 |
kasA | 2518147 | c.33C>T | synonymous_variant | 0.29 |
kasA | 2518151 | p.Ser13Arg | missense_variant | 0.43 |
eis | 2714846 | p.Val163Ile | missense_variant | 1.0 |
ribD | 2987166 | p.Gly110Cys | missense_variant | 0.2 |
thyA | 3073931 | p.Tyr181Asn | missense_variant | 0.33 |
thyA | 3074232 | p.Trp80* | stop_gained | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339143 | c.28_35delATCGGCTT | frameshift_variant | 0.29 |
fbiD | 3339156 | c.40_41insAGCCGATA | frameshift_variant | 0.29 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612529 | c.588C>T | synonymous_variant | 0.4 |
clpC1 | 4040259 | p.Glu149Ala | missense_variant | 0.18 |
panD | 4044289 | c.-8A>G | upstream_gene_variant | 0.5 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4248115 | c.1602C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
aftB | 4268026 | p.Val271Met | missense_variant | 0.5 |
ethR | 4328022 | c.477_481delAGGCG | frameshift_variant | 0.33 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |