Run ID: SRR13232558
Sample name:
Date: 03-04-2023 08:35:15
Number of reads: 4483798
Percentage reads mapped: 99.49
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.97 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6084 | p.Gly282Asp | missense_variant | 0.94 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 490680 | c.-103A>G | upstream_gene_variant | 0.98 |
mshA | 575378 | p.Gly11Arg | missense_variant | 0.97 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 0.99 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.98 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 0.96 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.15 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.19 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.8 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 0.27 |
Rv3083 | 3448745 | p.Ile81Ser | missense_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
Rv3083 | 3449728 | c.1225C>T | synonymous_variant | 0.5 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.23 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245825 | p.Asp865Asn | missense_variant | 0.98 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.19 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |