Run ID: SRR13628039
Sample name:
Date: 03-04-2023 09:08:19
Number of reads: 6580654
Percentage reads mapped: 97.61
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472222 | n.377G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472229 | n.384C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472253 | n.408G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472544 | n.699C>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475696 | n.2039T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475713 | n.2056C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.1 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.26 |