TB-Profiler result

Run: SRR13628039
Summary

Run ID: SRR13628039

Sample name:

Date: 03-04-2023 09:08:19

Number of reads: 6580654

Percentage reads mapped: 97.61

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.19
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.23
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.27
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.28
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.4
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.41
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.46
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.53
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.55
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.65
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.58
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.55
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.53
rrs 1472222 n.377G>A non_coding_transcript_exon_variant 0.49
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.46
rrs 1472229 n.384C>T non_coding_transcript_exon_variant 0.45
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.39
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.38
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.29
rrs 1472253 n.408G>C non_coding_transcript_exon_variant 0.25
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.23
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.25
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.27
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.27
rrs 1472544 n.699C>G non_coding_transcript_exon_variant 0.26
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.27
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.59
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.66
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.66
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.68
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.68
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.61
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.58
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.23
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.14
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.6
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.64
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.71
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.71
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.69
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.61
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.17
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.11
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.14
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.15
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.18
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.2
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.18
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.17
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.14
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.13
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.13
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.13
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.12
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.2
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.21
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.23
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.23
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 0.22
rrl 1475866 n.2209T>A non_coding_transcript_exon_variant 0.24
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.21
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.18
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.12
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.12
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.12
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.17
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.17
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.18
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.51
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.53
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.53
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.59
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.64
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.65
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.73
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.68
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.69
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.67
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.62
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.58
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.2
rrl 1476573 n.2916A>C non_coding_transcript_exon_variant 0.1
embB 4247028 p.Leu172Arg missense_variant 0.26