TB-Profiler result

Run: SRR13837440
Summary

Run ID: SRR13837440

Sample name:

Date: 03-04-2023 09:10:23

Number of reads: 881677

Percentage reads mapped: 95.02

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761402 c.1596C>T synonymous_variant 1.0
rpoC 762473 c.-897C>A upstream_gene_variant 1.0
mmpS5 778694 p.Tyr71Ser missense_variant 1.0
mmpR5 779478 p.Glu163Asp missense_variant 1.0
rplC 800969 p.Tyr54Ser missense_variant 1.0
embR 1417498 c.-151G>T upstream_gene_variant 1.0
rrs 1473125 n.1280A>T non_coding_transcript_exon_variant 1.0
rrl 1475195 n.1538G>T non_coding_transcript_exon_variant 1.0
katG 2155952 p.Val54Ile missense_variant 1.0
kasA 2518986 p.Met291Arg missense_variant 1.0
Rv2752c 3065218 p.Ser325Ile missense_variant 1.0
Rv3083 3448654 p.Pro51Ala missense_variant 1.0
whiB7 3568465 p.Asp72Val missense_variant 1.0
fbiA 3640597 p.Val19Leu missense_variant 1.0
alr 3840493 p.Leu310Val missense_variant 1.0
embC 4239802 c.-61T>A upstream_gene_variant 1.0
embC 4241184 p.Thr441Lys missense_variant 1.0
embA 4243518 p.Gly96Cys missense_variant 1.0
embA 4244162 c.931dupC frameshift_variant 1.0
embB 4247920 c.1407T>C synonymous_variant 1.0
ethA 4327042 p.Asp144Glu missense_variant 1.0
ethR 4327865 p.Gly106Ala missense_variant 1.0