Run ID: SRR13837444
Sample name:
Date: 03-04-2023 09:10:34
Number of reads: 881540
Percentage reads mapped: 97.01
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472122 | n.277G>C | non_coding_transcript_exon_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5319 | p.Arg27Leu | missense_variant | 1.0 |
rpoB | 760867 | p.Gly354Asp | missense_variant | 1.0 |
rpoB | 762496 | c.2691delC | frameshift_variant | 1.0 |
rpoC | 764793 | p.Met475Arg | missense_variant | 1.0 |
rpoC | 766563 | p.Thr1065Ser | missense_variant | 1.0 |
mmpL5 | 775976 | c.2505G>C | synonymous_variant | 1.0 |
mmpL5 | 776814 | p.Gln556Arg | missense_variant | 1.0 |
rplC | 800623 | c.-186A>C | upstream_gene_variant | 1.0 |
rplC | 800769 | c.-40A>T | upstream_gene_variant | 1.0 |
fbiC | 1302878 | c.-53C>G | upstream_gene_variant | 1.0 |
fbiC | 1303535 | p.Ser202Leu | missense_variant | 1.0 |
atpE | 1461256 | p.Met71Arg | missense_variant | 1.0 |
rrs | 1471836 | n.-10A>G | upstream_gene_variant | 1.0 |
katG | 2156157 | c.-46C>A | upstream_gene_variant | 1.0 |
PPE35 | 2168627 | p.Ile662Met | missense_variant | 1.0 |
Rv1979c | 2222100 | c.1065T>A | synonymous_variant | 1.0 |
pncA | 2289242 | c.-1T>C | upstream_gene_variant | 1.0 |
ribD | 2987205 | p.Ser123Ala | missense_variant | 1.0 |
ribD | 2987347 | p.Pro170Leu | missense_variant | 1.0 |
Rv3083 | 3448903 | p.Asp134His | missense_variant | 1.0 |
clpC1 | 4039663 | p.Gly348Ser | missense_variant | 1.0 |
embC | 4241256 | p.Arg465Thr | missense_variant | 1.0 |
embA | 4246449 | p.Val1073Phe | missense_variant | 1.0 |
aftB | 4268192 | c.645G>C | synonymous_variant | 1.0 |