TB-Profiler result

Run: SRR13837541
Summary

Run ID: SRR13837541

Sample name:

Date: 03-04-2023 09:12:50

Number of reads: 587612

Percentage reads mapped: 99.01

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5540 p.Thr101Ser missense_variant 1.0
rpoB 760558 c.753delC frameshift_variant 1.0
rpoB 760611 p.Leu269Val missense_variant 1.0
rpoB 762490 p.Val895Gly missense_variant 1.0
rpoC 765707 c.2340delA frameshift_variant 1.0
ndh 2101690 p.Glu451Asp missense_variant 1.0
PPE35 2168961 p.Gly551Val missense_variant 1.0
Rv1979c 2222084 p.Leu361Ile missense_variant 1.0
Rv1979c 2222431 p.Met245Arg missense_variant 1.0
ald 3087020 c.201C>T synonymous_variant 1.0
alr 3841157 c.264A>G synonymous_variant 1.0
rpoA 3878047 p.Ala154Asp missense_variant 1.0
embB 4247452 c.939C>T synonymous_variant 1.0
ethR 4326799 c.-750G>A upstream_gene_variant 1.0