Run ID: SRR13837543
Sample name:
Date: 03-04-2023 09:12:50
Number of reads: 588709
Percentage reads mapped: 97.19
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5540 | p.Thr101Ser | missense_variant | 1.0 |
rpoB | 760091 | c.285G>C | synonymous_variant | 0.12 |
rpoB | 760101 | c.295T>C | synonymous_variant | 0.12 |
rpoB | 760110 | p.Ser102Thr | missense_variant | 0.12 |
rpoB | 760118 | c.312T>G | synonymous_variant | 0.12 |
rpoB | 760121 | c.315T>C | synonymous_variant | 0.12 |
rpoB | 760130 | p.Asp108Glu | missense_variant | 0.11 |
rpoB | 760139 | c.333A>G | synonymous_variant | 0.11 |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.11 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.11 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.11 |
rpoB | 760558 | c.753delC | frameshift_variant | 1.0 |
rpoB | 760611 | p.Leu269Val | missense_variant | 1.0 |
rpoB | 762490 | p.Val895Gly | missense_variant | 1.0 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.12 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.13 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.15 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.15 |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.12 |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.15 |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.14 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.13 |
rpoC | 764810 | p.Pro481Ala | missense_variant | 0.13 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.13 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.13 |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.12 |
rpoC | 765707 | c.2340delA | frameshift_variant | 1.0 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474803 | n.1146G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.11 |
ndh | 2101690 | p.Glu451Asp | missense_variant | 1.0 |
PPE35 | 2168961 | p.Gly551Val | missense_variant | 1.0 |
Rv1979c | 2222084 | p.Leu361Ile | missense_variant | 1.0 |
Rv1979c | 2222431 | p.Met245Arg | missense_variant | 0.96 |
ald | 3087020 | c.201C>T | synonymous_variant | 1.0 |
alr | 3841157 | c.264A>G | synonymous_variant | 1.0 |
rpoA | 3878047 | p.Ala154Asp | missense_variant | 1.0 |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.13 |
rpoA | 3878196 | p.Glu104Ala | missense_variant | 0.13 |
rpoA | 3878205 | c.303T>C | synonymous_variant | 0.12 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.13 |
rpoA | 3878259 | c.249G>C | synonymous_variant | 0.12 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.12 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.11 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.12 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.12 |
rpoA | 3878301 | c.207C>G | synonymous_variant | 0.11 |
rpoA | 3878310 | c.198G>T | synonymous_variant | 0.11 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.11 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.11 |
clpC1 | 4039070 | c.1635G>C | synonymous_variant | 0.1 |
clpC1 | 4039078 | p.Lys543Gln | missense_variant | 0.1 |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.15 |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.11 |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.11 |
clpC1 | 4039178 | c.1527G>C | synonymous_variant | 0.11 |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.12 |
clpC1 | 4039190 | c.1515C>T | synonymous_variant | 0.12 |
embB | 4247452 | c.939C>T | synonymous_variant | 1.0 |
ethR | 4326799 | c.-750G>A | upstream_gene_variant | 1.0 |