Run ID: SRR13837585
Sample name:
Date: 03-04-2023 09:13:49
Number of reads: 587748
Percentage reads mapped: 96.02
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5532 | c.295dupG | frameshift_variant | 1.0 |
gyrB | 5832 | p.Ala198Gly | missense_variant | 1.0 |
gyrA | 6976 | c.-326A>G | upstream_gene_variant | 1.0 |
ccsA | 619735 | c.-156G>C | upstream_gene_variant | 1.0 |
ccsA | 620100 | c.210G>T | synonymous_variant | 1.0 |
rpoB | 759609 | c.-198C>A | upstream_gene_variant | 1.0 |
rpoC | 763050 | c.-320C>T | upstream_gene_variant | 1.0 |
mmpL5 | 776796 | p.Val562Ala | missense_variant | 1.0 |
mmpS5 | 778642 | p.Trp88* | stop_gained | 1.0 |
Rv1258c | 1407009 | p.Ala111Asp | missense_variant | 1.0 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.12 |
inhA | 1674891 | p.Trp230Cys | missense_variant | 1.0 |
tlyA | 1918625 | p.Pro229Leu | missense_variant | 1.0 |
Rv1979c | 2222721 | c.444G>C | synonymous_variant | 1.0 |
ahpC | 2726345 | p.Phe51Leu | missense_variant | 1.0 |
Rv2752c | 3067095 | c.-904G>C | upstream_gene_variant | 1.0 |
ald | 3086887 | p.Val23Ala | missense_variant | 0.11 |
Rv3083 | 3448912 | p.Ile137Phe | missense_variant | 1.0 |
fprA | 3474133 | p.Pro43Thr | missense_variant | 1.0 |
whiB7 | 3568676 | p.Ser2Ala | missense_variant | 1.0 |
alr | 3840783 | c.637_638insT | frameshift_variant | 1.0 |
clpC1 | 4038326 | p.Glu793Asp | missense_variant | 1.0 |
embC | 4241026 | c.1164C>G | synonymous_variant | 1.0 |
embA | 4242250 | c.-983C>G | upstream_gene_variant | 1.0 |
embB | 4247398 | c.885G>T | synonymous_variant | 1.0 |
embB | 4249328 | p.Met939Leu | missense_variant | 1.0 |
aftB | 4267490 | c.1347G>C | synonymous_variant | 1.0 |
ethA | 4326203 | p.Ser424* | stop_gained | 1.0 |