Run ID: SRR13837661
Sample name:
Date: 03-04-2023 09:15:22
Number of reads: 294373
Percentage reads mapped: 97.19
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7837 | p.Gly179Val | missense_variant | 1.0 |
rpoB | 762257 | c.2451C>G | synonymous_variant | 1.0 |
mmpL5 | 777730 | p.Gly251Arg | missense_variant | 1.0 |
fbiC | 1304816 | p.His629Arg | missense_variant | 1.0 |
fbiC | 1304869 | p.Leu647Met | missense_variant | 1.0 |
rpsA | 1834666 | c.1125G>C | synonymous_variant | 0.29 |
rpsA | 1834667 | p.Ala376Ser | missense_variant | 0.29 |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.22 |
rpsA | 1834698 | c.1157_1158insC | frameshift_variant | 0.22 |
rpsA | 1834701 | p.Gln387Pro | missense_variant | 0.22 |
rpsA | 1834704 | c.1164delC | frameshift_variant | 0.22 |
rpsA | 1834720 | c.1179C>G | synonymous_variant | 0.22 |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.2 |
rpsA | 1834738 | c.1197A>G | synonymous_variant | 0.17 |
rpsA | 1834753 | c.1212T>C | synonymous_variant | 0.17 |
rpsA | 1834759 | c.1218A>C | synonymous_variant | 0.15 |
rpsA | 1834765 | p.Glu408Asp | missense_variant | 0.15 |
rpsA | 1834774 | c.1233C>T | synonymous_variant | 0.17 |
rpsA | 1834777 | c.1236C>G | synonymous_variant | 0.17 |
rpsA | 1834780 | c.1239A>G | synonymous_variant | 0.17 |
rpsA | 1834789 | c.1248T>C | synonymous_variant | 0.13 |
tlyA | 1918527 | c.588G>T | synonymous_variant | 1.0 |
ndh | 2102259 | p.Ser262Ala | missense_variant | 1.0 |
ndh | 2102557 | c.485delG | frameshift_variant | 1.0 |
katG | 2156260 | c.-149C>A | upstream_gene_variant | 1.0 |
PPE35 | 2169123 | p.Thr497Ile | missense_variant | 1.0 |
Rv2752c | 3066145 | p.Leu16Ser | missense_variant | 1.0 |
Rv3236c | 3612326 | p.Thr264Ile | missense_variant | 1.0 |
Rv3236c | 3612504 | p.His205Tyr | missense_variant | 1.0 |
Rv3236c | 3612779 | p.Leu113* | stop_gained | 1.0 |
fbiB | 3640821 | c.-714G>C | upstream_gene_variant | 1.0 |
rpoA | 3878381 | p.Leu43Met | missense_variant | 1.0 |
rpoA | 3878543 | c.-36G>C | upstream_gene_variant | 1.0 |
embC | 4240536 | c.678delC | frameshift_variant | 1.0 |
embB | 4248562 | c.2049G>C | synonymous_variant | 1.0 |