Run ID: SRR13837670
Sample name:
Date: 03-04-2023 09:15:35
Number of reads: 294345
Percentage reads mapped: 97.18
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5785 | c.546C>T | synonymous_variant | 1.0 |
gyrB | 6314 | c.1076dupC | frameshift_variant | 1.0 |
gyrA | 7495 | p.Arg65His | missense_variant | 1.0 |
gyrA | 8780 | p.Asp493Glu | missense_variant | 1.0 |
ccsA | 620129 | p.Gly80Ala | missense_variant | 1.0 |
rpoB | 761845 | p.Gln680Arg | missense_variant | 1.0 |
rplC | 800937 | c.129A>G | synonymous_variant | 1.0 |
embR | 1416298 | c.1050G>C | synonymous_variant | 1.0 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472846 | n.1001C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472847 | n.1002G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472848 | n.1003T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475592 | n.1935A>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1918324 | p.Val129Leu | missense_variant | 1.0 |
PPE35 | 2168503 | p.Phe704Leu | missense_variant | 1.0 |
PPE35 | 2168604 | p.Pro670His | missense_variant | 1.0 |
ahpC | 2726771 | c.579T>A | synonymous_variant | 1.0 |
folC | 2746808 | p.Ala264Gly | missense_variant | 1.0 |
Rv2752c | 3067057 | c.-867_-866insG | upstream_gene_variant | 1.0 |
ald | 3087587 | c.769delC | frameshift_variant | 1.0 |
fbiA | 3641252 | p.Thr237Ser | missense_variant | 1.0 |
rpoA | 3877496 | p.Glu338* | stop_gained | 1.0 |
rpoA | 3878184 | c.324C>T | synonymous_variant | 0.17 |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.15 |
rpoA | 3878196 | p.Glu104Ala | missense_variant | 0.15 |
rpoA | 3878205 | c.303T>C | synonymous_variant | 0.17 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.17 |
rpoA | 3878259 | c.249G>C | synonymous_variant | 0.15 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.15 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.21 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.17 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.17 |
rpoA | 3878301 | c.207C>G | synonymous_variant | 0.17 |
rpoA | 3878310 | c.198G>T | synonymous_variant | 0.15 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.15 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.15 |
ddn | 3986684 | c.-160G>C | upstream_gene_variant | 1.0 |
embC | 4240480 | c.618G>A | synonymous_variant | 1.0 |
embA | 4244410 | p.Trp393Ser | missense_variant | 1.0 |
embB | 4249447 | c.2934G>A | synonymous_variant | 1.0 |
whiB6 | 4338681 | c.-160A>T | upstream_gene_variant | 1.0 |