Run ID: SRR13837674
Sample name:
Date: 03-04-2023 09:15:38
Number of reads: 293828
Percentage reads mapped: 96.0
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289223 | p.Val7Leu | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5850 | c.611_612insA | frameshift_variant | 1.0 |
mshA | 576390 | p.Val348Glu | missense_variant | 0.2 |
rpoB | 762083 | c.2277T>A | synonymous_variant | 1.0 |
rpoC | 764464 | c.1095C>A | synonymous_variant | 0.15 |
rpoC | 766578 | p.Asp1070Val | missense_variant | 1.0 |
mmpL5 | 776436 | p.Ala682Gly | missense_variant | 1.0 |
fbiC | 1303756 | c.827dupC | frameshift_variant | 1.0 |
fbiC | 1304155 | p.Arg409Gly | missense_variant | 1.0 |
atpE | 1460879 | c.-166C>A | upstream_gene_variant | 1.0 |
rrl | 1474320 | n.663G>A | non_coding_transcript_exon_variant | 0.25 |
ndh | 2102784 | p.Gly87Ser | missense_variant | 1.0 |
pncA | 2290201 | c.-960G>A | upstream_gene_variant | 1.0 |
kasA | 2518058 | c.-57G>A | upstream_gene_variant | 1.0 |
eis | 2714947 | p.Phe129Ser | missense_variant | 1.0 |
pepQ | 2860319 | p.Ser34Thr | missense_variant | 1.0 |
Rv2752c | 3064817 | p.Asp459Tyr | missense_variant | 1.0 |
whiB7 | 3568660 | p.Pro7Leu | missense_variant | 1.0 |
alr | 3841536 | c.-117_-116insT | upstream_gene_variant | 1.0 |
ddn | 3986940 | p.Asp33His | missense_variant | 1.0 |
embB | 4246529 | p.Ser6Arg | missense_variant | 1.0 |