Run ID: SRR13837682
Sample name:
Date: 03-04-2023 09:15:49
Number of reads: 293857
Percentage reads mapped: 99.01
Strain: lineage4.9
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
katG | 2154411 | c.1700delT | frameshift_variant | 1.0 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7949 | c.648G>T | synonymous_variant | 1.0 |
gyrA | 8123 | p.Leu274Phe | missense_variant | 1.0 |
gyrA | 9768 | p.Gly823Cys | missense_variant | 1.0 |
rpoC | 763734 | p.Pro122Leu | missense_variant | 1.0 |
rrl | 1476640 | n.2983C>A | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1918034 | p.Val32Ala | missense_variant | 1.0 |
katG | 2155918 | p.Ala65Val | missense_variant | 1.0 |
PPE35 | 2168767 | p.Ser616Gly | missense_variant | 1.0 |
PPE35 | 2170678 | c.-66C>T | upstream_gene_variant | 0.22 |
Rv1979c | 2222377 | p.Val263Gly | missense_variant | 1.0 |
ribD | 2986993 | p.Gly52Val | missense_variant | 1.0 |
Rv2752c | 3065787 | c.405G>C | synonymous_variant | 1.0 |
Rv3083 | 3448649 | p.Arg49Pro | missense_variant | 1.0 |
Rv3236c | 3613067 | p.Val17Gly | missense_variant | 1.0 |
Rv3236c | 3613315 | c.-199T>G | upstream_gene_variant | 1.0 |
fbiA | 3640435 | c.-108A>C | upstream_gene_variant | 1.0 |
clpC1 | 4039842 | c.862_863insT | frameshift_variant | 1.0 |
panD | 4044103 | p.Ile60Ser | missense_variant | 1.0 |
embA | 4245031 | p.Arg600Gln | missense_variant | 1.0 |
gid | 4408218 | c.-16G>T | upstream_gene_variant | 1.0 |