Run ID: SRR13837707
Sample name:
Date: 03-04-2023 09:16:19
Number of reads: 297249
Percentage reads mapped: 97.12
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.14 | streptomycin |
embC | 4240748 | p.Tyr296His | missense_variant | 1.0 | ethambutol |
embB | 4247959 | p.Met482Ile | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6728 | c.-574C>T | upstream_gene_variant | 0.25 |
fgd1 | 491360 | p.Ile193Ser | missense_variant | 1.0 |
mshA | 576396 | p.Ser350Ile | missense_variant | 1.0 |
rpoB | 760225 | p.Glu140Ala | missense_variant | 1.0 |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.18 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.18 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.17 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.14 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.15 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.14 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.14 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.14 |
rpoB | 761306 | c.1500C>G | synonymous_variant | 0.15 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.18 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.18 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.2 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.18 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.22 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.22 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.29 |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.22 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.22 |
rpoC | 763657 | c.288G>A | synonymous_variant | 0.22 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.22 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.2 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.18 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.18 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.19 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.14 |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.13 |
rpoC | 765739 | c.2370G>T | synonymous_variant | 0.14 |
rpoC | 765751 | c.2382C>G | synonymous_variant | 0.15 |
rpoC | 767186 | p.Gln1273* | stop_gained | 1.0 |
mmpR5 | 779067 | p.Tyr26* | stop_gained | 1.0 |
rplC | 800933 | p.Pro42His | missense_variant | 1.0 |
fbiC | 1305306 | c.2376A>T | synonymous_variant | 1.0 |
rrl | 1474291 | n.635_649delTTCCTCTCCGGAGGA | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474376 | n.719T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475267 | n.1610G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.22 |
tlyA | 1918380 | c.441C>G | synonymous_variant | 0.15 |
tlyA | 1918560 | c.621G>T | synonymous_variant | 1.0 |
ndh | 2102402 | p.Leu214Arg | missense_variant | 1.0 |
katG | 2156175 | c.-64T>G | upstream_gene_variant | 0.89 |
PPE35 | 2169349 | p.Phe422Ile | missense_variant | 1.0 |
PPE35 | 2170540 | p.Leu25Val | missense_variant | 1.0 |
pncA | 2288999 | p.Phe81Leu | missense_variant | 1.0 |
thyX | 3067736 | c.210C>T | synonymous_variant | 0.4 |
thyX | 3067761 | p.Arg62Lys | missense_variant | 0.4 |
thyX | 3067765 | p.Leu61Ile | missense_variant | 0.4 |
thyX | 3067772 | c.174C>G | synonymous_variant | 0.4 |
thyX | 3067775 | c.171C>T | synonymous_variant | 0.4 |
thyX | 3067781 | c.165C>G | synonymous_variant | 0.4 |
thyX | 3067793 | c.153T>C | synonymous_variant | 0.5 |
thyX | 3067799 | c.147G>A | synonymous_variant | 0.5 |
thyX | 3067802 | c.144C>G | synonymous_variant | 0.5 |
thyX | 3067814 | c.132T>C | synonymous_variant | 0.5 |
thyX | 3067850 | c.96A>C | synonymous_variant | 0.33 |
fbiD | 3339660 | c.543C>G | synonymous_variant | 1.0 |
Rv3236c | 3612627 | p.Ala164Thr | missense_variant | 1.0 |
rpoA | 3877920 | c.588G>C | synonymous_variant | 0.17 |
rpoA | 3877923 | c.585C>T | synonymous_variant | 0.17 |
rpoA | 3877926 | c.582G>C | synonymous_variant | 0.18 |
embA | 4244119 | p.Tyr296Phe | missense_variant | 1.0 |
embB | 4247417 | p.Tyr302Asn | missense_variant | 1.0 |
embB | 4248036 | p.Val508Gly | missense_variant | 1.0 |
embB | 4248325 | c.1812G>C | synonymous_variant | 1.0 |
aftB | 4267894 | p.Ile315Phe | missense_variant | 1.0 |
ethA | 4326052 | p.Asp474Glu | missense_variant | 1.0 |
ethA | 4327388 | p.Thr29Ile | missense_variant | 1.0 |
ethR | 4328162 | p.His205Pro | missense_variant | 1.0 |
whiB6 | 4338518 | c.4C>A | synonymous_variant | 1.0 |