TB-Profiler result

Run: SRR13837745
Summary

Run ID: SRR13837745

Sample name:

Date: 03-04-2023 09:17:21

Number of reads: 2938220

Percentage reads mapped: 98.0

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6561 p.Lys441Arg missense_variant 1.0
gyrA 7705 p.Thr135Ser missense_variant 1.0
gyrA 8409 p.Leu370Ile missense_variant 1.0
ccsA 620157 c.267G>T synonymous_variant 1.0
rplC 801215 c.408delC frameshift_variant 1.0
fbiC 1304409 c.1479C>G synonymous_variant 1.0
fbiC 1304501 p.Ala524Gly missense_variant 1.0
rrs 1472791 n.946G>C non_coding_transcript_exon_variant 1.0
PPE35 2168564 c.2049T>A synonymous_variant 1.0
kasA 2519179 c.1065G>C synonymous_variant 1.0
folC 2746546 p.Asp351Glu missense_variant 1.0
thyX 3068038 c.-93C>A upstream_gene_variant 1.0
Rv3083 3448608 c.105G>A synonymous_variant 1.0
Rv3236c 3612721 c.396G>T synonymous_variant 1.0
fbiA 3641221 p.Pro227Ala missense_variant 0.98
clpC1 4039647 p.Glu353Ala missense_variant 1.0
embC 4240006 c.144A>C synonymous_variant 1.0
embA 4244074 p.Ala281Val missense_variant 1.0
embA 4245739 p.Arg836His missense_variant 1.0
ethA 4326731 p.Ala248Gly missense_variant 1.0
ethR 4327623 c.75_76insC frameshift_variant 1.0
gid 4408334 c.-132G>T upstream_gene_variant 1.0